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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0456700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycerophosphoryl diester phosphodiesterase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0426) R2 : 0.18
β1 : -0.898 (0.138) R2dD : 0.181 R2D : -0.206
β2 : 6.84 (1.94) R2dC : 24.2 R2C : -25.1
β3 : -6.94 (1.92) R2dE : 25.3 R2E : -24.3
β4 : -47.9 (6.01) R2dD*C : 82.4 R2D*C : -81.7
β5 : 47.3 (5.95) R2dD*E : 81.3 R2D*E : -81.9
γ1 : 0.0192 (0.0533) R2dN8 : 0.000314 R2N8 : -0.0599
σ : 0.467
deviance : 98.8
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_____
C
peak time of C : 0.00252
E
wheather : radiation
threshold : 39.13
memory length : 9
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 6.07
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
98.8 0.467 3.07 -0.898 6.84 -6.94 -47.9 47.3 0.0192 0.00252 39.13 9 6.07 --
120.11 0.514 2.82 -0.078 11.6 11.6 -0.374 -- -0.00654 4.23 812.5 5 13.8 --
120.11 0.51 2.93 -0.0805 1.76 1.75 -- 0.376 -0.00405 4.69 642.9 47520 13.6 --
120.5 0.511 2.83 -0.0738 11.8 11.8 -- -- -0.00347 4.13 852.6 3 13.9 --
120.38 0.511 2.95 -0.0758 -- 0.146 -- 0.185 -0.00339 -- 654 47520 19.1 --
120.38 0.514 2.95 -0.0806 0.146 -- 0.186 -- -0.00364 10.9 -- -- -- --
120.5 0.514 2.95 -0.0738 0.147 -- -- -- -0.00355 10.4 -- -- -- --
120.5 0.511 2.95 -0.0736 -- 0.147 -- -- -0.00362 -- 690.8 47520 19.6 --
120.65 0.512 2.83 -- 12 12 -- -- 0.00464 4.08 891.2 3 14 --
121.83 0.516 2.95 -0.0761 -- -- -- -- -0.00401 -- -- -- -- --
120.65 0.514 2.95 -- 0.148 -- -- -- 0.00467 10.4 -- -- -- --
120.65 0.512 2.95 -- -- 0.147 -- -- 0.00469 -- 718.8 47520 19.6 --
121.98 0.516 2.95 -- -- -- -- -- 0.00444 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 93.09 humidity 70 10 < th dose independent rect. 18 14
5 93.11 humidity 70 90 < th dose dependent rect. 18 14
6 93.11 humidity 70 10 < th dose dependent rect. 17 16
8 93.16 humidity 80 90 < th dose dependent rect. 22 9
12 93.19 radiation 30 10 > th dose independent rect. 7 1
36 93.25 radiation 30 90 > th dose independent rect. 7 1
72 93.27 humidity 80 90 < th dose dependent rect. 6 1
73 93.27 radiation 30 10 > th dose dependent rect. 7 1
89 93.28 humidity 80 90 < th dose independent rect. 6 1
152 93.33 humidity 70 10 < th dose independent rect. 7 1
212 93.33 humidity 70 10 < th dose dependent rect. 7 1
642 98.55 atmosphere 1005 30 > th dose dependent rect. 7 1
737 101.72 radiation 40 10 < th dose independent sin 12 NA
793 103.33 humidity 70 10 < th dose independent sin 11 NA
828 104.50 humidity 70 10 > th dose independent sin 11 NA
880 105.77 radiation 30 10 > th dose independent sin 12 NA
892 106.10 radiation 20 10 > th dose dependent sin 12 NA
913 106.36 humidity 80 1440 < th dose dependent rect. 22 9
917 106.47 humidity 70 1440 > th dose independent rect. 21 10
929 106.98 humidity 70 4320 < th dose dependent rect. 7 1
951 107.34 humidity 70 1440 > th dose independent rect. 24 7
952 107.36 humidity 80 720 < th dose dependent rect. 6 1