Os03g0603600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycerophosphoryl diester phosphodiesterase family protein.
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Os03g0603600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycerophosphoryl diester phosphodiesterase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 230.59 | 0.713 | 7.95 | -4.85 | 1.05 | -2.32 | 2.81 | 0.237 | -1.05 | 4.06 | 25.5 | 10 | -- | -- |
| 230.35 | 0.712 | 7.95 | -4.8 | 1.05 | -2.33 | 2.88 | -- | -1.04 | 4 | 25.5 | 10 | -- | -- |
| 249.01 | 0.735 | 7.97 | -5.03 | 1.06 | -2.16 | -- | 1.57 | -1.07 | 4.43 | 25.48 | 10 | -- | -- |
| 254.05 | 0.747 | 7.95 | -4.83 | 1.06 | -2.28 | -- | -- | -1.04 | 4.23 | 25.5 | 10 | -- | -- |
| 294.66 | 0.799 | 7.95 | -4.94 | -- | -1.81 | -- | 1.78 | -0.909 | -- | 24.09 | 16 | -- | -- |
| 316.22 | 0.834 | 7.84 | -4.29 | 0.687 | -- | 2.76 | -- | -0.553 | 4.78 | -- | -- | -- | -- |
| 332.71 | 0.854 | 7.84 | -4.29 | 0.756 | -- | -- | -- | -0.566 | 5.97 | -- | -- | -- | -- |
| 298.52 | 0.805 | 7.93 | -4.75 | -- | -2.08 | -- | -- | -0.876 | -- | 24 | 136 | -- | -- |
| 814.72 | 1.34 | 7.76 | -- | 0.734 | -0.492 | -- | -- | -0.177 | 5.74 | 25.5 | 10 | -- | -- |
| 362.34 | 0.889 | 7.86 | -4.27 | -- | -- | -- | -- | -0.548 | -- | -- | -- | -- | -- |
| 818.73 | 1.34 | 7.74 | -- | 0.694 | -- | -- | -- | -0.0875 | 6.27 | -- | -- | -- | -- |
| 841.17 | 1.35 | 7.76 | -- | -- | -0.398 | -- | -- | -0.123 | -- | 23.6 | 10 | -- | -- |
| 843.72 | 1.36 | 7.75 | -- | -- | -- | -- | -- | -0.0745 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 230.42 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 3 | 230.62 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 4 | 230.94 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 5 | 230.99 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 6 | 231.15 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 7 | 231.19 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 8 | 231.26 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 9 | 231.28 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 11 | 231.36 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 14 | 231.57 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 18 | 231.63 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 23 | 231.80 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 26 | 231.87 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 28 | 232.05 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 130 | 237.85 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 145 | 238.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 17 |
| 146 | 238.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 18 |
| 180 | 238.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 207 | 239.49 | temperature | 10 | 720 | > th | dose dependent | sin | 13 | NA |
| 236 | 240.06 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 248 | 240.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 260 | 240.37 | temperature | 15 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 298 | 240.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 21 |
| 301 | 241.01 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 365 | 242.14 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 385 | 242.42 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 416 | 242.76 | radiation | 30 | 4320 | < th | dose independent | rect. | 1 | 7 |
| 436 | 243.00 | radiation | 30 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 449 | 243.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 503 | 243.79 | humidity | 50 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 504 | 243.80 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 19 |
| 510 | 243.86 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 21 |
| 538 | 244.20 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 539 | 244.20 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 594 | 244.69 | humidity | 60 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 595 | 244.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 597 | 244.73 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 601 | 244.78 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 615 | 244.89 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 621 | 244.94 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 629 | 245.03 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 645 | 245.18 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 649 | 245.21 | temperature | 25 | 10 | < th | dose dependent | sin | 6 | NA |
| 679 | 245.42 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 683 | 245.44 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 699 | 245.54 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 17 |
| 710 | 245.63 | temperature | 10 | 10 | > th | dose dependent | sin | 8 | NA |
| 714 | 245.66 | humidity | 50 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 743 | 245.95 | temperature | 30 | 10 | < th | dose dependent | sin | 8 | NA |
| 781 | 246.28 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 782 | 246.28 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 801 | 246.45 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 806 | 246.47 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 813 | 246.50 | humidity | 50 | 4320 | > th | dose independent | rect. | 19 | 22 |
| 818 | 246.52 | humidity | 50 | 4320 | > th | dose independent | rect. | 21 | 20 |
| 838 | 246.60 | humidity | 50 | 4320 | > th | dose independent | rect. | 24 | 17 |
| 866 | 246.79 | humidity | 50 | 4320 | > th | dose independent | rect. | 11 | 6 |
| 870 | 246.81 | temperature | 10 | 1440 | > th | dose dependent | sin | 23 | NA |
| 891 | 247.00 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 933 | 247.28 | humidity | 50 | 14400 | < th | dose dependent | rect. | 8 | 5 |
| 955 | 247.35 | humidity | 50 | 4320 | > th | dose independent | rect. | 5 | 12 |
| 981 | 247.56 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 4 |