Os08g0503200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycerophosphoryl diester phosphodiesterase family protein.
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Os08g0503200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycerophosphoryl diester phosphodiesterase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.24 | 0.294 | 11.9 | -1.33 | 0.518 | 1.14 | 0.13 | 0.424 | -0.317 | 22.2 | 9.483 | 3853 | -- | -- |
| 39.4 | 0.292 | 11.9 | -1.42 | 0.521 | 1.12 | 0.151 | -- | -0.343 | 22.2 | 9.995 | 3858 | -- | -- |
| 39.31 | 0.292 | 11.9 | -1.33 | 0.517 | 1.14 | -- | 0.447 | -0.316 | 22.3 | 9.359 | 3845 | -- | -- |
| 39.49 | 0.293 | 11.9 | -1.43 | 0.518 | 1.13 | -- | -- | -0.343 | 22.3 | 10.11 | 3846 | -- | -- |
| 51.06 | 0.333 | 11.9 | -1.24 | -- | 1.43 | -- | 0.465 | -0.327 | -- | 1.131 | 839 | -- | -- |
| 61.56 | 0.368 | 11.9 | -0.933 | 0.597 | -- | 0.172 | -- | -0.125 | 22.6 | -- | -- | -- | -- |
| 61.69 | 0.368 | 11.9 | -0.94 | 0.596 | -- | -- | -- | -0.126 | 22.6 | -- | -- | -- | -- |
| 51.33 | 0.334 | 11.9 | -1.3 | -- | 1.42 | -- | -- | -0.353 | -- | -4.298 | 842 | -- | -- |
| 77.19 | 0.409 | 11.9 | -- | 0.537 | 0.456 | -- | -- | -0.105 | 22.3 | 22.28 | 2515 | -- | -- |
| 83.59 | 0.427 | 11.9 | -0.928 | -- | -- | -- | -- | -0.123 | -- | -- | -- | -- | -- |
| 84.95 | 0.431 | 11.9 | -- | 0.59 | -- | -- | -- | -0.0211 | 22.5 | -- | -- | -- | -- |
| 89.69 | 0.441 | 11.9 | -- | -- | 0.763 | -- | -- | -0.137 | -- | 20.47 | 811 | -- | -- |
| 106.32 | 0.481 | 11.8 | -- | -- | -- | -- | -- | -0.0197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.61 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 2 | 36.62 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 3 | 36.92 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 10 | 37.11 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 11 | 37.13 | radiation | 1 | 4320 | > th | dose dependent | rect. | 18 | 12 |
| 12 | 37.24 | radiation | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 15 | 37.25 | radiation | 40 | 4320 | < th | dose dependent | rect. | 1 | 5 |
| 38 | 37.40 | radiation | 30 | 4320 | < th | dose dependent | rect. | 16 | 15 |
| 61 | 37.55 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 62 | 37.61 | radiation | 1 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 74 | 37.64 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 81 | 37.70 | radiation | 20 | 4320 | < th | dose dependent | rect. | 17 | 3 |
| 125 | 38.06 | radiation | 10 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 146 | 38.41 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 14 |
| 149 | 38.44 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 154 | 38.46 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 162 | 38.64 | radiation | 30 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 178 | 38.69 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 3 |
| 179 | 38.70 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 3 |
| 196 | 38.80 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 206 | 38.80 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 210 | 38.84 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 220 | 38.85 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 241 | 38.90 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 303 | 39.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 320 | 39.02 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 330 | 39.04 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 13 |
| 426 | 39.26 | radiation | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 469 | 39.35 | radiation | 1 | 14400 | < th | dose independent | sin | 9 | NA |
| 473 | 39.35 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 18 |
| 607 | 39.47 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 17 |
| 633 | 39.49 | temperature | 10 | 4320 | > th | dose dependent | sin | 14 | NA |
| 791 | 39.64 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 21 |
| 825 | 39.66 | temperature | 10 | 4320 | > th | dose dependent | rect. | 10 | 18 |
| 862 | 39.68 | temperature | 30 | 4320 | < th | dose dependent | sin | 13 | NA |
| 882 | 39.69 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 920 | 39.70 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 921 | 39.70 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 923 | 39.70 | temperature | 10 | 4320 | > th | dose dependent | rect. | 10 | 23 |