BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0672400 Os11g0672400|J023100I24
(182 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0672400 Kinesin, motor region domain containing protein 329 8e-91
Os12g0547500 Calponin-like actin-binding domain containing ... 155 2e-38
Os03g0301800 Similar to Kinesin-like polypeptides 9 (Fragment) 116 8e-27
Os05g0521300 Similar to Kinesin heavy chain (Fragment) 85 3e-17
Os01g0744000 Similar to Kinesin heavy chain (Fragment) 83 1e-16
Os01g0243100 Similar to Kinesin 82 3e-16
Os06g0554700 Similar to Kinesin heavy chain (Fragment) 79 2e-15
>Os11g0672400 Kinesin, motor region domain containing protein
Length = 182
Score = 329 bits (843), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 164/182 (90%), Positives = 164/182 (90%)
Query: 1 MHMFLTEIANLLSYCRILLVSLKLYILVFTLLKLEACGVSFSIFPWLGGQAKTLMFVHIA 60
MHMFLTEIANLLSYCRILLVSLKLYILVFTLLKLEACGVSFSIFPWLGGQAKTLMFVHIA
Sbjct: 1 MHMFLTEIANLLSYCRILLVSLKLYILVFTLLKLEACGVSFSIFPWLGGQAKTLMFVHIA 60
Query: 61 PEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQVLIPAPPFHFXXXXXXXX 120
PEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQVLIPAPPFHF
Sbjct: 61 PEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQVLIPAPPFHFLNLGQILL 120
Query: 121 XXXXXXXXXXKAALAKKDGETESIRSTQSSPDIYRMRMGSAPPAFRNPMEEVGNLEVFPF 180
KAALAKKDGETESIRSTQSSPDIYRMRMGSAPPAFRNPMEEVGNLEVFPF
Sbjct: 121 MYLLLQIACLKAALAKKDGETESIRSTQSSPDIYRMRMGSAPPAFRNPMEEVGNLEVFPF 180
Query: 181 PR 182
PR
Sbjct: 181 PR 182
>Os12g0547500 Calponin-like actin-binding domain containing protein
Length = 954
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/134 (61%), Positives = 98/134 (73%), Gaps = 27/134 (20%)
Query: 47 LGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQVLIP 106
LGGQAKTLMFVH++PE DA+GE+ISTLKFAERVA+VELGAAK+NKEG EV+ELKEQ+
Sbjct: 664 LGGQAKTLMFVHVSPELDAVGETISTLKFAERVASVELGAAKANKEGSEVRELKEQI--- 720
Query: 107 APPFHFXXXXXXXXXXXXXXXXXXKAALAKKDGETESIRSTQSSPDIYRMRMGSAPPAF- 165
KAALAKK+GE E+I+STQSSPD+YR++ G+A PAF
Sbjct: 721 ---------------------ATLKAALAKKEGEPENIQSTQSSPDMYRIKRGNAIPAFP 759
Query: 166 --RNPMEEVGNLEV 177
R PMEEVGNLEV
Sbjct: 760 KNRQPMEEVGNLEV 773
>Os03g0301800 Similar to Kinesin-like polypeptides 9 (Fragment)
Length = 510
Score = 116 bits (291), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 86/150 (57%), Gaps = 41/150 (27%)
Query: 47 LGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQVLIP 106
LGGQAKTLMFVHI+PE DA+GESISTLKFAERV+TVELGAA+ NKE GEVKELKEQ+
Sbjct: 183 LGGQAKTLMFVHISPESDALGESISTLKFAERVSTVELGAARLNKESGEVKELKEQI--- 239
Query: 107 APPFHFXXXXXXXXXXXXXXXXXXKAALAKKDGETESIRSTQSSPDIYRMRM-------- 158
K++LA KD +E ++ P+ + M+M
Sbjct: 240 ---------------------ARLKSSLAMKDSGSE--QNINRDPEAFNMKMPSPGFSNR 276
Query: 159 -------GSAPPAFRNPMEEVGNLEVFPFP 181
S+ FR PME+VGN+EV P
Sbjct: 277 RQGSCELVSSQTNFRQPMEDVGNIEVRANP 306
>Os05g0521300 Similar to Kinesin heavy chain (Fragment)
Length = 926
Score = 84.7 bits (208), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 47 LGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQV 103
LGGQAKTLMFV I P+ ++ E+ISTLKFAERV+ VELGAA+SNKEG ++KEL EQV
Sbjct: 683 LGGQAKTLMFVQINPDVESYSETISTLKFAERVSGVELGAARSNKEGKDIKELLEQV 739
>Os01g0744000 Similar to Kinesin heavy chain (Fragment)
Length = 971
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 47 LGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQV 103
LGGQAKTLMFV I P+ ++ E+ISTLKFAERV+ VELGAA+SN+EG ++KEL EQV
Sbjct: 764 LGGQAKTLMFVQINPDIESYSETISTLKFAERVSGVELGAARSNREGKDIKELLEQV 820
>Os01g0243100 Similar to Kinesin
Length = 473
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 46/57 (80%)
Query: 47 LGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQV 103
LGG AKTLMF HI+PE D+ E++STLKFA+R + VELG A +NKE E++ELKEQV
Sbjct: 135 LGGNAKTLMFAHISPEADSYVETLSTLKFAQRASCVELGTAHANKESNEIRELKEQV 191
>Os06g0554700 Similar to Kinesin heavy chain (Fragment)
Length = 438
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 47/57 (82%)
Query: 47 LGGQAKTLMFVHIAPEPDAIGESISTLKFAERVATVELGAAKSNKEGGEVKELKEQV 103
LGG AKTLMFV + P+ + E++STLKFA+RV+ VELGAAK+NKEG ++KE KEQ+
Sbjct: 136 LGGNAKTLMFVQVNPDVSSYAETLSTLKFADRVSGVELGAAKANKEGKDIKEFKEQL 192
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,330,452
Number of extensions: 166942
Number of successful extensions: 422
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 7
Length of query: 182
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 87
Effective length of database: 12,075,471
Effective search space: 1050565977
Effective search space used: 1050565977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)