BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0496500 Os11g0496500|AK062973
(69 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0496500 Similar to AT.I.24-5 protein (Fragment) 108 8e-25
Os04g0387600 Conserved hypothetical protein 80 4e-16
Os05g0103300 Similar to AT.I.24-5 protein (Fragment) 78 1e-15
Os02g0508100 Conserved hypothetical protein 77 3e-15
Os01g0923200 Conserved hypothetical protein 76 7e-15
Os02g0508801 75 9e-15
Os07g0298400 Conserved hypothetical protein 75 1e-14
Os05g0103400 Conserved hypothetical protein 72 7e-14
Os01g0101900 66 7e-12
>Os11g0496500 Similar to AT.I.24-5 protein (Fragment)
Length = 69
Score = 108 bits (270), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 56/69 (81%)
Query: 1 MADWGPVFIGLVLFILLSPGLLFQIPGKGRIVEFGNFQTSGLSILVHSXXXXXXXXXXXX 60
MADWGPVFIGLVLFILLSPGLLFQIPGKGRIVEFGNFQTSGLSILVHS
Sbjct: 1 MADWGPVFIGLVLFILLSPGLLFQIPGKGRIVEFGNFQTSGLSILVHSIIYFALIAIFLL 60
Query: 61 XVNVHMYLG 69
VNVHMYLG
Sbjct: 61 AVNVHMYLG 69
>Os04g0387600 Conserved hypothetical protein
Length = 69
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 47/69 (68%)
Query: 1 MADWGPVFIGLVLFILLSPGLLFQIPGKGRIVEFGNFQTSGLSILVHSXXXXXXXXXXXX 60
MADWGPV + VLF+LL+PGLL +PG+GR+ EFG+F TSGL+I+VH+
Sbjct: 1 MADWGPVVVATVLFVLLTPGLLCTVPGRGRVAEFGSFHTSGLAIIVHAVLYFALLTIFLI 60
Query: 61 XVNVHMYLG 69
+ VH+Y G
Sbjct: 61 AIGVHIYAG 69
>Os05g0103300 Similar to AT.I.24-5 protein (Fragment)
Length = 72
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 46/69 (66%)
Query: 1 MADWGPVFIGLVLFILLSPGLLFQIPGKGRIVEFGNFQTSGLSILVHSXXXXXXXXXXXX 60
M DWGPV I VLFILLSPGLLFQIPGK R++EFG FQTS +SILVH+
Sbjct: 1 MQDWGPVLISWVLFILLSPGLLFQIPGKCRLIEFGKFQTSVVSILVHTILFFALDAIFLV 60
Query: 61 XVNVHMYLG 69
+ V + LG
Sbjct: 61 AIGVQINLG 69
>Os02g0508100 Conserved hypothetical protein
Length = 72
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%)
Query: 1 MADWGPVFIGLVLFILLSPGLLFQIPGKGRIVEFGNFQTSGLSILVHSXXXXXXXXXXXX 60
MADWGPV I VLF+LL+PGLLFQ+P GRIV FG TSG+++LVH+
Sbjct: 4 MADWGPVVIATVLFVLLTPGLLFQLPAHGRIVGFGTMHTSGVAVLVHAVIYFALITIFLI 63
Query: 61 XVNVHMYLG 69
+ VH+Y G
Sbjct: 64 AIGVHIYAG 72
>Os01g0923200 Conserved hypothetical protein
Length = 75
Score = 75.9 bits (185), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 3 DWGPVFIGLVLFILLSPGLLFQIPGKGRIVEFGNFQTSGLSILVHSXXXXXXXXXXXXXV 62
DWGP+ + ++LF++LSPGLLFQ+P + R+VEFGN TS ++ILVH+ +
Sbjct: 9 DWGPIIVAVILFVVLSPGLLFQLPARARVVEFGNMATSAIAILVHAVIFFCLLTIFVVAI 68
Query: 63 NVHMY 67
VH+Y
Sbjct: 69 GVHVY 73
>Os02g0508801
Length = 70
Score = 75.5 bits (184), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 45/67 (67%)
Query: 3 DWGPVFIGLVLFILLSPGLLFQIPGKGRIVEFGNFQTSGLSILVHSXXXXXXXXXXXXXV 62
DWGPV + ++LFILLSPGLLFQ+P + R+VEFGN TSG+S+LVH+ +
Sbjct: 4 DWGPVVVAVILFILLSPGLLFQVPARTRVVEFGNMCTSGVSVLVHAVFFFVLFTVLVVAI 63
Query: 63 NVHMYLG 69
+H+ G
Sbjct: 64 GIHVRAG 70
>Os07g0298400 Conserved hypothetical protein
Length = 78
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 42/66 (63%)
Query: 2 ADWGPVFIGLVLFILLSPGLLFQIPGKGRIVEFGNFQTSGLSILVHSXXXXXXXXXXXXX 61
DWGP+ +VLFILLSPG LFQ+P + R+VE GN TSGLSILVH+
Sbjct: 5 TDWGPIIAAVVLFILLSPGFLFQLPARARVVELGNMGTSGLSILVHAILYFCILTIVVVA 64
Query: 62 VNVHMY 67
+ VH+Y
Sbjct: 65 IGVHVY 70
>Os05g0103400 Conserved hypothetical protein
Length = 69
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 43/66 (65%)
Query: 1 MADWGPVFIGLVLFILLSPGLLFQIPGKGRIVEFGNFQTSGLSILVHSXXXXXXXXXXXX 60
M+DWGPV I +VLF+LLSPGLL Q+PG+ VEFGN TS +SI+VHS
Sbjct: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI 60
Query: 61 XVNVHM 66
+ VH+
Sbjct: 61 VIGVHI 66
>Os01g0101900
Length = 72
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 3 DWGPVFIGLVLFILLSPGLLFQIPGK-GRIVEFGNFQTSGLSILVHSXXXXXXXXXXXXX 61
DWGPV I LVLF+LL+PGLL QIPG GR+ EF + +TS SI VH+
Sbjct: 5 DWGPVLIALVLFVLLTPGLLCQIPGSNGRVAEFHSMRTSVASIFVHALLFFAFCAIFMVA 64
Query: 62 VNVHMYLG 69
V +H+Y G
Sbjct: 65 VGLHLYAG 72
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.151 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,758,012
Number of extensions: 47051
Number of successful extensions: 71
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 11
Length of query: 69
Length of database: 17,035,801
Length adjustment: 41
Effective length of query: 28
Effective length of database: 14,895,027
Effective search space: 417060756
Effective search space used: 417060756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)