BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0479400 Os11g0479400|J075052H04
(188 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0479400 Hypothetical protein 385 e-108
Os10g0394400 Similar to NBS-LRR type resistance protein (Fr... 147 6e-36
Os11g0704100 Disease resistance protein family protein 134 4e-32
Os05g0250700 Ribosomal protein L13 family protein 127 5e-30
Os11g0479100 Disease resistance protein family protein 122 2e-28
Os05g0219200 118 3e-27
Os09g0308500 Disease resistance protein family protein 111 3e-25
Os03g0689400 Disease resistance protein family protein 99 3e-21
Os03g0689800 Disease resistance protein family protein 89 2e-18
>Os11g0479400 Hypothetical protein
Length = 188
Score = 385 bits (990), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MPKLENMHISWCLLNQLPPGLASQARSLRILVVDNVKNLISIDGFCSVVQLHVSSNFKLE 60
MPKLENMHISWCLLNQLPPGLASQARSLRILVVDNVKNLISIDGFCSVVQLHVSSNFKLE
Sbjct: 1 MPKLENMHISWCLLNQLPPGLASQARSLRILVVDNVKNLISIDGFCSVVQLHVSSNFKLE 60
Query: 61 RISDLPKMESLTVSRCPKLNILQRLPALQSMELNDQEMERLPDCLRDLPAKLRHLRITCN 120
RISDLPKMESLTVSRCPKLNILQRLPALQSMELNDQEMERLPDCLRDLPAKLRHLRITCN
Sbjct: 61 RISDLPKMESLTVSRCPKLNILQRLPALQSMELNDQEMERLPDCLRDLPAKLRHLRITCN 120
Query: 121 LDLLTLISRGKGTPEWEKIKHIQQVNACTDAEDDKTDKRFVFYKRDSDSTETNIEPSPST 180
LDLLTLISRGKGTPEWEKIKHIQQVNACTDAEDDKTDKRFVFYKRDSDSTETNIEPSPST
Sbjct: 121 LDLLTLISRGKGTPEWEKIKHIQQVNACTDAEDDKTDKRFVFYKRDSDSTETNIEPSPST 180
Query: 181 SQVGVGAQ 188
SQVGVGAQ
Sbjct: 181 SQVGVGAQ 188
>Os10g0394400 Similar to NBS-LRR type resistance protein (Fragment)
Length = 673
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 108/176 (61%), Gaps = 4/176 (2%)
Query: 1 MPKLENMHISWCLLNQLPPGLASQARSLRILVVDNVKNLISIDGFCSVVQLHVSSNFKLE 60
MP L +H+ C L+ LPPGL QAR+L+ L V N +NL S++GF SV++L V N LE
Sbjct: 497 MPVLSVLHVKDCNLSHLPPGLPYQARALKRLCVINARNLNSVEGFSSVIKLEVYGNPNLE 556
Query: 61 RISDLPKMESLTVSRCPKLNILQRLPALQSMELNDQEMERLPDCLRDLPAKLRHLRITCN 120
RI DLP +++LT+ CPKL +L + ++Q MEL D ME LP+ LR L LRHL+I C+
Sbjct: 557 RIVDLPSLQNLTIVNCPKLMLLDGVASVQIMELGDHGMETLPEYLRHL--TLRHLKIVCS 614
Query: 121 LDLLTLIS--RGKGTPEWEKIKHIQQVNACTDAEDDKTDKRFVFYKRDSDSTETNI 174
L+LL L+S EWEKI HI V D + ++ Y RD + ETNI
Sbjct: 615 LNLLRLMSTKHDASRSEWEKISHIMHVEGFASDNGDGILRWYMSYTRDPYNLETNI 670
>Os11g0704100 Disease resistance protein family protein
Length = 1096
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 114/181 (62%), Gaps = 2/181 (1%)
Query: 1 MPKLENMHISWCLLNQLPPGLASQARSLRILVVDNVKNLISIDGFCSVVQLHVSSNFKLE 60
MP+LE + + C L LPPGL+SQA +L + + ++K L ++ F S+V+L + N LE
Sbjct: 893 MPELEELMLENCKLRCLPPGLSSQATALTSMGLCDIKYLNFVESFASLVKLELQDNPDLE 952
Query: 61 RISDLPKMESLTVSRCPKLNILQRLPALQSMELNDQEMERLPDCLRDLPAKLRHLRITCN 120
R++ +P+++ L + CPK+ L+ +P L+ + L D +ME+LP L+ + + HL + C+
Sbjct: 953 RVTSMPRLQKLIIIGCPKMRTLEGVPELRKLALEDCDMEQLPRYLQQGVSPM-HLVLDCS 1011
Query: 121 LDLLTLISRGKGTPEWEKIKHIQQVNACTDAEDDKTDKRFVFYKRDSDSTETNIEPSPST 180
L+LLT I+ G+ PEW K+ H+Q V A D DDK K V Y R+ S ETNI SPS+
Sbjct: 1012 LELLTSIALGESGPEWGKLSHVQHVKAYADQGDDKR-KWHVLYTREPYSFETNIGDSPSS 1070
Query: 181 S 181
+
Sbjct: 1071 N 1071
>Os05g0250700 Ribosomal protein L13 family protein
Length = 1044
Score = 127 bits (318), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
Query: 1 MPKLENMHISWCLLNQLPPGLASQARSLRILVVDNVKNLISIDGFCSVVQLHVSSNFKLE 60
MP LE + I C L +LPPGL+SQA +L L + N++ L S++ F S+V+L V N LE
Sbjct: 857 MPALEELVIENCKLRRLPPGLSSQATALTSLYLRNIQQLNSVESFASLVKLEVYDNPNLE 916
Query: 61 RISDLPKMESLTVSRCPKLNILQRLPALQSMELNDQEMERLPDCLRDLPAKLRHLRITCN 120
I+ L K++ L + C K+ IL+ +P L +EL D +ME LP L RHL + C+
Sbjct: 917 SITSLNKLQKLVIDGCLKMRILEGVPELLRLELKDLDMEELPGYLLQ-SVSPRHLVLDCS 975
Query: 121 LDLLTLISRGKGTPEWEKIKHIQQVNACTDAEDDKTDKRFVFYKRDSDSTETN 173
L++LT IS G+ PEW K+ +Q V A D D++ + V Y RD ETN
Sbjct: 976 LEMLTAISTGESGPEWSKLSRVQHVKAYADQGDNER-RWHVLYTRDPYRFETN 1027
>Os11g0479100 Disease resistance protein family protein
Length = 1114
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 96/156 (61%), Gaps = 2/156 (1%)
Query: 1 MPKLENMHISWCLLNQLPPGLASQARSLRILVVDNVKNLISIDGFCSVVQLHVSSNFKLE 60
M LE + + C L LPPGLA AR+L+ L + V+NL S+D F VV+L V N L+
Sbjct: 949 MAVLEELLLERCKLRCLPPGLAFHARALKKLWICEVQNLKSLDNFACVVELSVDDNPDLQ 1008
Query: 61 RISDLPKMESLTVSRCPKLNILQRLPALQSMELNDQEMERLPDCLRDLPAKLRHLRITCN 120
RIS+ PK+ L + CPK+ +L+ +P L+ + L D +E LP L+ + +R+L + C+
Sbjct: 1009 RISNFPKLRKLDIMFCPKMEVLENVPELRILTLKDYSIETLPGYLQQV--SMRNLFVDCS 1066
Query: 121 LDLLTLISRGKGTPEWEKIKHIQQVNACTDAEDDKT 156
+LL+ I+ G PEW KI HIQQV A +D D+T
Sbjct: 1067 FELLSSIAMGDTGPEWNKISHIQQVKANSDDGYDET 1102
>Os05g0219200
Length = 1094
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 96/151 (63%), Gaps = 4/151 (2%)
Query: 1 MPKLENMHISWCLLNQLPPGLASQARSLRILVVDNVKNLISIDGFCSVVQLHVSSNFKLE 60
MP LE + IS+C L +PPGL QAR+L+ L +++V+ L+SI+ F S+V L + N KLE
Sbjct: 883 MPVLEGLSISYCELKYIPPGLPCQARALKSLYLESVRQLVSIENFPSLVNLQLIENPKLE 942
Query: 61 RISDLPKMESLTVSRCPKLNILQRLPALQSMELNDQEMERLPDCLRDLPAKLRHLRITCN 120
R+++ P ++++ + CP L +L+ LP L S+ D + E+LP+C +P L+ L + CN
Sbjct: 943 RVTNNPSLKNIYIWECPALKVLEELPLLNSIYWWDLKAEKLPECF-GVPM-LKKLFVHCN 1000
Query: 121 LDLLTLISRGKGTPEWEKIKHIQQVNA--CT 149
L LIS T EW KI+H+ Q+ A CT
Sbjct: 1001 RRLFGLISLQDTTSEWGKIQHVSQLKAYGCT 1031
>Os09g0308500 Disease resistance protein family protein
Length = 1380
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 5/175 (2%)
Query: 1 MPKLENMHISWCLLNQLPPGLASQARSLRILVVDNVKNLISIDGFCSVVQLHVSSNFKLE 60
MP L ++I C L+ LPPGL+ QA++LR L + NV++L ++ F SV++L N LE
Sbjct: 942 MPVLSVLNIRNCKLHYLPPGLSYQAKALRRLSIANVQHLNCLENFSSVIKLDAYDNPDLE 1001
Query: 61 RISDLPKMESLTVSRCPKLNILQRLPALQSMELNDQEMERLPDCLRDLPAKLRHLRITCN 120
RI++LP M++LTV CPKL + + +L+S++L EME LP L+D KL L I C+
Sbjct: 1002 RIANLPNMQNLTVVGCPKLMVFNNVKSLRSIQLGISEMETLPAYLQD--TKLEQLEIACS 1059
Query: 121 LDLLTLISRGKGTPEWEKIKHIQQVNACTDAEDDKTDKRFVFYKRDSDSTETNIE 175
L LL L+ + + EW KI +I V + + ++ Y + S +TNIE
Sbjct: 1060 LKLLKLMVKKESWSEWGKISNIMHVKGFA---SENGRRWYISYTKHPFSFDTNIE 1111
>Os03g0689400 Disease resistance protein family protein
Length = 1046
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 98/178 (55%), Gaps = 3/178 (1%)
Query: 1 MPKLENMHISWCLLNQLPPGLASQARSLRILVVDNVKNLISIDGFCSVVQLHVSSNFKLE 60
MP LE++ + LN+LPPGL R+L+ LV+ N +L S++ S+V+L+++ N KLE
Sbjct: 871 MPALESLTVENSKLNRLPPGLVYHTRALKALVLTNAVSLESVENLHSLVELYLADNPKLE 930
Query: 61 RISDLPKMESLTVSRCPKLNILQRLPALQSMELNDQEMERLPDCLRDLPAKLRHLRITC- 119
+ + + + + RCP+L RLPA++S+ D + + LP L++ AK++ L I C
Sbjct: 931 MVVNCSSLTKIEILRCPELKAFDRLPAVRSIVWEDLDADTLPGYLQE--AKVKRLHINCN 988
Query: 120 NLDLLTLISRGKGTPEWEKIKHIQQVNACTDAEDDKTDKRFVFYKRDSDSTETNIEPS 177
L + + + EW ++H+QQ+ +T + + Y ++ ETNI +
Sbjct: 989 LSLLNLISLQDASSEEWRSVRHVQQLKVFGFKPQSETSECYFLYTKEPYHVETNISKA 1046
>Os03g0689800 Disease resistance protein family protein
Length = 954
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 85/136 (62%), Gaps = 4/136 (2%)
Query: 40 ISIDGFCSVVQLHVSSNFKLERISDLPKMESLTVSRCPKLNILQRLPALQSMELNDQEME 99
+S + F S+V+L + N KL+RIS+ P++ + V RCP L +++ L +L+S+ D + +
Sbjct: 818 LSRENFPSLVELTSADNPKLQRISNSPRLRHIVVIRCPGLKVVKDLQSLRSVIWKDLDAD 877
Query: 100 RLPDCLRDLPAKLRHLRITCNLDLLTLISRGKGTPEWEKIKHIQQVNACTD-AEDDKTDK 158
LP+ LR+ +L L + C+L LL LIS G+ EWEKI+H+Q + A + +DK D
Sbjct: 878 ALPEYLRE--TELNKLDVYCSLRLLKLISLQDGSYEWEKIQHVQLLKAYGKRSTEDKVD- 934
Query: 159 RFVFYKRDSDSTETNI 174
R +FY +D S E ++
Sbjct: 935 RHIFYTKDPYSFEADM 950
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,275,885
Number of extensions: 241037
Number of successful extensions: 939
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 927
Number of HSP's successfully gapped: 10
Length of query: 188
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 93
Effective length of database: 12,075,471
Effective search space: 1123018803
Effective search space used: 1123018803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)