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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0704100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.0267) R2 : 0.00498
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0848 (0.0561) R2dN8 : 0.00643 R2N8 : 0.00498
σ : 0.502
deviance : 115.65
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
109.43 0.491 3.27 0.178 0.264 0.275 -0.182 1.12 0.0503 7.46 91 4848 -- --
110.95 0.491 3.26 0.125 0.22 0.315 -0.346 -- 0.0344 7.33 96.9 4299 -- --
109.51 0.487 3.27 0.177 0.265 0.268 -- 1.19 0.0545 7.6 91.28 4937 -- --
111.17 0.491 3.27 0.103 0.243 0.337 -- -- 0.0152 7.52 106.6 4299 -- --
112.3 0.494 3.27 0.188 -- 0.252 -- 1.2 0.0651 -- 91 5823 -- --
112.35 0.497 3.25 0.0871 0.232 -- -0.306 -- 0.0898 7.46 -- -- -- --
112.6 0.497 3.25 0.0804 0.231 -- -- -- 0.0906 7.62 -- -- -- --
114.03 0.497 3.27 0.0994 -- 0.341 -- -- 0.0231 -- 111.4 4288 -- --
111.4 0.492 3.27 -- 0.232 0.331 -- -- 0.0118 7.6 111.5 4275 -- --
115.47 0.502 3.26 0.0836 -- -- -- -- 0.094 -- -- -- -- --
112.77 0.497 3.25 -- 0.232 -- -- -- 0.0816 7.6 -- -- -- --
114.29 0.498 3.28 -- -- 0.331 -- -- 0.0142 -- 208.2 4286 -- --
115.65 0.502 3.26 -- -- -- -- -- 0.0848 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 102.51 radiation 10.0 30 > th dose independent rect. 7 2
2 102.51 humidity 80.0 10 < th dose independent rect. 6 3
4 102.56 humidity 80.0 10 < th dose independent rect. 23 10
26 103.28 radiation 10.0 10 > th dose independent rect. 16 17
36 103.78 temperature 25.0 30 > th dose independent rect. 7 2
55 104.83 radiation 10.0 10 > th dose independent sin 11 NA
60 105.39 temperature 20.0 30 > th dose dependent rect. 7 2
64 105.51 humidity 90.0 90 < th dose dependent rect. 1 8
66 105.56 atmosphere 1005.0 30 > th dose independent rect. 7 2
69 105.64 humidity 90.0 10 < th dose dependent rect. 7 2
76 105.82 atmosphere 995.0 90 > th dose independent rect. 9 22
83 105.92 wind 3.0 10 > th dose dependent rect. 8 1
116 106.17 wind 1.0 90 > th dose independent rect. 7 2
117 106.18 wind 5.0 90 < th dose independent rect. 7 2
118 106.21 humidity 50.0 4320 > th dose independent rect. 8 2
120 106.22 atmosphere 1000.0 30 > th dose dependent rect. 7 2
123 106.28 radiation 1.0 30 > th dose dependent rect. 7 2
131 106.33 radiation 40.0 90 < th dose independent rect. 7 2
144 106.39 temperature 30.0 90 < th dose independent rect. 7 2
146 106.39 wind 9.0 90 < th dose dependent rect. 7 2
154 106.45 humidity 60.0 90 > th dose independent rect. 7 2
155 106.46 precipitation 0.1 90 < th dose independent rect. 7 2
156 106.46 precipitation 0.1 90 < th dose dependent rect. 7 2
166 106.49 temperature 10.0 90 > th dose independent rect. 7 2
169 106.49 atmosphere 995.0 90 > th dose independent rect. 7 2
170 106.49 atmosphere 1015.0 90 < th dose independent rect. 7 2
171 106.49 temperature 10.0 90 > th dose independent rect. 9 22
180 106.57 temperature 10.0 1440 > th dose independent rect. 8 2
183 106.57 atmosphere 995.0 1440 > th dose independent rect. 8 2
186 106.57 atmosphere 1015.0 1440 < th dose independent rect. 8 2
189 106.57 temperature 10.0 1440 > th dose independent rect. 10 22
211 106.61 humidity 80.0 10 < th dose independent rect. 20 13
236 106.69 wind 9.0 90 < th dose independent rect. 9 22
248 106.79 precipitation 0.1 30 < th dose independent rect. 9 22
250 106.79 precipitation 0.1 30 < th dose dependent rect. 9 22
256 106.85 radiation 20.0 10 < th dose independent rect. 7 2
303 106.98 atmosphere 1015.0 10 < th dose dependent rect. 8 1
316 107.05 humidity 50.0 30 > th dose independent rect. 9 22
379 107.26 temperature 30.0 10 < th dose dependent rect. 8 1
394 107.33 radiation 1.0 30 > th dose dependent rect. 16 17
440 107.40 humidity 50.0 10 > th dose dependent rect. 8 1
451 107.44 radiation 40.0 10 < th dose dependent rect. 8 1
542 107.77 humidity 80.0 10 < th dose dependent rect. 20 13
558 107.85 atmosphere 995.0 90 > th dose independent rect. 9 10
613 108.03 radiation 10.0 10 < th dose independent sin 11 NA
615 108.06 wind 1.0 30 > th dose independent rect. 9 22
617 108.06 atmosphere 995.0 30 > th dose dependent rect. 9 22
643 108.19 atmosphere 995.0 720 > th dose independent rect. 23 16
666 108.25 atmosphere 1015.0 30 < th dose independent rect. 9 22
687 108.30 wind 7.0 90 < th dose independent rect. 19 14
696 108.34 temperature 30.0 30 < th dose independent rect. 9 22
708 108.37 precipitation 0.1 90 < th dose independent rect. 19 14
710 108.37 precipitation 0.1 90 < th dose dependent rect. 19 14
720 108.39 wind 1.0 90 > th dose independent rect. 9 10
726 108.43 temperature 30.0 90 < th dose independent rect. 19 14
733 108.46 temperature 10.0 30 > th dose dependent rect. 9 22
735 108.47 temperature 10.0 90 > th dose independent rect. 9 10
736 108.47 atmosphere 1015.0 90 < th dose independent rect. 9 10
737 108.47 temperature 10.0 90 > th dose independent rect. 19 14
738 108.47 humidity 50.0 90 > th dose independent rect. 19 14
739 108.47 atmosphere 995.0 90 > th dose independent rect. 19 14
744 108.47 humidity 80.0 14400 < th dose dependent rect. 3 6
765 108.50 radiation 40.0 90 < th dose independent rect. 19 14
808 108.59 wind 9.0 90 < th dose independent rect. 9 10
817 108.61 radiation 1.0 90 > th dose independent rect. 9 21
820 108.62 precipitation 0.1 90 < th dose independent rect. 9 10
821 108.62 precipitation 0.1 90 < th dose dependent rect. 9 10
868 108.79 humidity 70.0 1440 < th dose independent rect. 10 1
892 108.82 radiation 20.0 10 < th dose independent rect. 7 5
895 108.83 precipitation 0.1 720 < th dose independent rect. 15 8
899 108.83 precipitation 0.1 720 < th dose dependent rect. 15 8
906 108.85 atmosphere 1015.0 90 < th dose independent rect. 19 14
912 108.88 humidity 50.0 90 > th dose independent rect. 9 10
915 108.89 humidity 50.0 4320 > th dose independent rect. 20 14
916 108.89 humidity 80.0 14400 < th dose dependent rect. 23 11
930 108.92 humidity 70.0 1440 > th dose independent rect. 10 1
933 108.93 radiation 20.0 10 < th dose independent rect. 7 10
936 108.93 temperature 25.0 10 > th dose dependent rect. 4 5
939 108.94 temperature 10.0 720 > th dose independent rect. 15 8
940 108.94 temperature 10.0 720 > th dose independent rect. 23 16
956 108.94 wind 9.0 30 < th dose dependent rect. 9 22
958 108.96 wind 1.0 90 > th dose independent rect. 1 8
970 109.00 humidity 70.0 14400 > th dose independent rect. 8 1
971 109.00 humidity 70.0 14400 > th dose independent rect. 7 3
988 109.01 atmosphere 995.0 90 > th dose dependent rect. 9 10