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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0479400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.55 (0.0415) R2 : 0.192
β1 : -1.31 (0.152) R2dD : 0.138 R2D : 0.115
β2 : 0.579 (0.104) R2dC : 0.055 R2C : 0.048
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.289 (0.0885) R2dN8 : 0.0254 R2N8 : -0.00128
σ : 0.779
deviance : 276.96
__
_____
C
peak time of C : 8.45
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
256.22 0.752 3.46 -0.585 0.546 0.865 -1.17 -1.5 -0.0173 7.76 24.92 4066 -- --
256.5 0.746 3.47 -0.748 0.607 0.848 -1.19 -- 0.0304 8.01 21.7 4999 -- --
260.14 0.751 3.46 -0.604 0.553 0.867 -- -1.48 -0.0117 7.8 24.9 4048 -- --
260.39 0.752 3.48 -0.809 0.563 0.823 -- -- 0.01 8.28 21.7 5012 -- --
272.85 0.769 3.47 -0.54 -- 0.998 -- -1.43 0.044 -- 25.1 3534 -- --
273.18 0.775 3.55 -1.28 0.579 -- -1.11 -- -0.29 8.29 -- -- -- --
276.96 0.779 3.55 -1.31 0.579 -- -- -- -0.289 8.45 -- -- -- --
274.82 0.772 3.51 -0.969 -- 0.906 -- -- -0.0419 -- 24.7 3558 -- --
270.05 0.765 3.46 -- 0.539 1.27 -- -- 0.156 8.5 21 5087 -- --
295.68 0.803 3.57 -1.31 -- -- -- -- -0.284 -- -- -- -- --
322.52 0.84 3.52 -- 0.574 -- -- -- -0.143 8.62 -- -- -- --
286.48 0.788 3.46 -- -- 1.34 -- -- 0.194 -- 21 5099 -- --
341.09 0.862 3.53 -- -- -- -- -- -0.138 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 246.52 radiation 40 4320 < th dose independent rect. 16 5
3 248.71 radiation 40 4320 < th dose independent rect. 16 14
4 248.81 radiation 1 14400 < th dose dependent rect. 8 9
7 249.42 temperature 15 43200 < th dose independent rect. 10 1
9 249.70 temperature 15 43200 > th dose independent rect. 10 1
10 249.79 radiation 40 4320 < th dose independent rect. 16 2
16 249.99 temperature 15 43200 < th dose independent rect. 1 1
19 250.04 temperature 15 43200 > th dose independent rect. 1 1
23 250.07 temperature 15 43200 < th dose independent rect. 21 5
25 250.09 temperature 15 43200 > th dose independent rect. 19 8
28 250.11 temperature 15 43200 > th dose independent rect. 9 5
29 250.11 temperature 15 43200 < th dose independent rect. 19 8
31 250.12 temperature 15 43200 > th dose independent rect. 21 5
51 250.23 radiation 40 14400 < th dose independent rect. 24 8
63 250.27 temperature 15 43200 > th dose independent rect. 9 18
77 250.34 temperature 15 43200 < th dose independent rect. 9 5
113 250.46 temperature 15 43200 < th dose independent rect. 9 18
139 250.58 radiation 40 14400 < th dose independent rect. 4 4
147 250.60 temperature 15 43200 > th dose independent sin 15 NA
157 250.63 temperature 15 43200 < th dose independent rect. 21 1
171 250.67 temperature 15 43200 > th dose independent rect. 21 1
199 250.72 radiation 40 4320 < th dose independent rect. 16 11
204 250.73 radiation 1 14400 < th dose dependent rect. 13 4
209 250.75 temperature 15 43200 < th dose independent sin 14 NA
224 250.79 temperature 15 43200 > th dose independent rect. 17 22
230 250.80 temperature 15 43200 > th dose independent rect. 18 20
254 250.85 temperature 15 43200 > th dose independent rect. 21 18
263 250.86 temperature 15 43200 < th dose independent rect. 18 18
269 250.86 temperature 20 4320 < th dose dependent rect. 18 1
270 250.87 radiation 40 14400 < th dose independent rect. 7 1
271 250.87 atmosphere 1015 43200 > th dose independent rect. 14 2
277 250.87 temperature 15 43200 < th dose independent rect. 18 20
308 250.90 temperature 15 43200 > th dose independent rect. 13 23
309 250.90 temperature 15 43200 > th dose independent rect. 21 23
323 250.92 temperature 15 43200 > th dose independent no NA NA
419 251.01 humidity 90 43200 > th dose independent rect. 24 1
470 251.05 temperature 15 43200 < th dose independent rect. 13 23
500 251.08 radiation 40 43200 > th dose independent rect. 7 1
523 251.08 radiation 40 43200 > th dose dependent rect. 7 1
550 251.10 temperature 15 43200 < th dose independent no NA NA
604 251.14 temperature 15 43200 < th dose independent rect. 24 23
666 251.24 radiation 1 14400 > th dose independent rect. 11 1
674 251.25 atmosphere 1015 43200 < th dose independent rect. 15 5
807 251.61 atmosphere 1015 43200 < th dose independent rect. 15 2
822 251.65 atmosphere 1015 43200 < th dose independent rect. 18 1
843 251.70 radiation 30 4320 > th dose independent rect. 16 1
853 251.70 radiation 40 4320 < th dose independent rect. 16 8
887 251.75 radiation 1 14400 < th dose independent rect. 11 1
890 251.75 radiation 1 14400 < th dose dependent rect. 11 1
923 251.83 humidity 90 43200 > th dose dependent rect. 24 1
925 251.84 radiation 20 43200 < th dose independent rect. 17 4
939 251.87 atmosphere 1015 43200 > th dose dependent rect. 20 1
949 251.90 radiation 20 43200 < th dose independent rect. 17 7
953 251.91 radiation 30 4320 > th dose dependent rect. 16 1
979 251.95 radiation 20 43200 < th dose independent rect. 17 1
986 251.96 radiation 20 43200 < th dose independent rect. 24 6
992 251.99 temperature 15 43200 < th dose independent rect. 5 9
995 252.00 radiation 20 43200 < th dose independent rect. 17 9