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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0479100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0169) R2 : 0.00277
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.04 (0.0356) R2dN8 : 0.00358 R2N8 : 0.00277
σ : 0.318
deviance : 46.46
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.34 0.316 2.84 -0.0117 0.0675 0.337 -0.0463 -0.265 0.0638 16.1 1.214 77 -- --
45.37 0.314 2.83 -0.0018 0.0623 0.308 -0.0195 -- 0.0614 15.8 1.196 75 -- --
45.34 0.314 2.84 -0.0112 0.0664 0.335 -- -0.232 0.0635 15.8 1.204 77 -- --
45.37 0.314 2.83 -0.00365 0.0643 0.304 -- -- 0.063 15.6 1.2 77 -- --
45.55 0.314 2.83 -0.00454 -- 0.273 -- -0.146 0.059 -- 1.2 77 -- --
46.31 0.319 2.84 0.0292 0.0132 -- 0.205 -- 0.044 7.32 -- -- -- --
46.41 0.319 2.84 0.0343 0.0189 -- -- -- 0.0439 10.5 -- -- -- --
45.55 0.314 2.83 -0.00176 -- 0.282 -- -- 0.059 -- 0.9 75 -- --
45.37 0.314 2.83 -- 0.0637 0.302 -- -- 0.0637 15.7 1.201 77 -- --
46.43 0.318 2.84 0.0339 -- -- -- -- 0.0438 -- -- -- -- --
46.44 0.319 2.84 -- 0.0187 -- -- -- 0.0401 10.4 -- -- -- --
45.55 0.314 2.83 -- -- 0.288 -- -- 0.0585 -- 0.9 75 -- --
46.46 0.318 2.84 -- -- -- -- -- 0.04 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.04 wind 1 10 < th dose independent rect. 5 5
3 40.06 wind 1 10 < th dose independent rect. 5 3
7 40.62 wind 1 10 < th dose independent rect. 5 1
10 42.27 wind 1 10 < th dose independent rect. 5 13
19 43.09 atmosphere 1000 90 < th dose independent rect. 20 1
20 43.09 atmosphere 1000 10 < th dose independent rect. 21 1
38 43.09 atmosphere 1000 90 < th dose dependent rect. 20 1
39 43.09 atmosphere 1000 10 < th dose dependent rect. 21 1
70 43.41 wind 1 90 < th dose dependent rect. 20 1
77 44.23 wind 1 90 < th dose independent rect. 20 1
92 44.40 wind 1 10 < th dose dependent rect. 5 5
94 44.43 wind 1 10 < th dose dependent rect. 5 3
104 44.56 wind 1 10 < th dose independent rect. 7 1
105 44.56 humidity 70 10 < th dose independent rect. 7 1
108 44.56 atmosphere 1000 10 < th dose independent rect. 7 1
172 44.56 wind 1 10 < th dose dependent rect. 7 1
173 44.56 humidity 70 10 < th dose dependent rect. 7 1
176 44.56 atmosphere 1000 10 < th dose dependent rect. 7 1
261 44.70 wind 1 10 < th dose independent sin 3 NA
264 44.71 wind 1 10 < th dose independent rect. 2 8
273 44.77 wind 1 10 < th dose independent rect. 2 6
286 44.82 wind 1 10 < th dose dependent rect. 5 1
311 44.90 wind 1 10 > th dose independent sin 3 NA
327 44.92 wind 1 10 > th dose independent rect. 24 14
334 44.99 atmosphere 995 4320 > th dose independent rect. 5 1
362 45.09 wind 1 10 > th dose independent rect. 17 21
366 45.12 wind 7 1440 < th dose independent rect. 5 1
368 45.12 temperature 10 1440 > th dose independent rect. 5 1
371 45.12 temperature 30 1440 < th dose independent rect. 5 1
375 45.12 humidity 50 1440 > th dose independent rect. 5 1
385 45.12 atmosphere 1015 1440 < th dose independent rect. 5 1
386 45.12 radiation 20 1440 < th dose independent rect. 5 1
398 45.12 wind 1 10 > th dose independent rect. 17 23
399 45.12 temperature 10 1440 > th dose independent rect. 6 23
430 45.15 wind 1 10 > th dose independent rect. 2 12
435 45.15 wind 1 90 < th dose independent rect. 4 18
447 45.17 wind 1 10 > th dose independent rect. 22 16
458 45.20 wind 1 90 < th dose dependent rect. 4 18
465 45.22 atmosphere 1000 720 < th dose independent rect. 21 1
466 45.22 wind 1 270 < th dose independent rect. 4 2
468 45.22 atmosphere 1000 10 < th dose independent rect. 21 12
485 45.24 wind 1 10 > th dose independent rect. 15 23
499 45.26 atmosphere 1005 30 > th dose independent rect. 14 3
504 45.26 wind 1 10 > th dose independent rect. 22 22
507 45.26 wind 1 90 < th dose dependent rect. 4 23
508 45.27 temperature 25 90 > th dose independent rect. 20 1
516 45.27 wind 1 10 < th dose dependent rect. 5 11
524 45.28 wind 1 90 < th dose dependent rect. 4 1
525 45.28 humidity 90 10 > th dose dependent rect. 20 1
544 45.30 atmosphere 1005 30 > th dose dependent rect. 14 3
551 45.32 radiation 30 10 > th dose independent rect. 7 1
592 45.33 radiation 10 30 > th dose independent rect. 16 15
593 45.33 wind 1 90 > th dose independent rect. 15 23
632 45.36 atmosphere 1000 30 > th dose independent rect. 17 9
639 45.36 atmosphere 1000 30 > th dose independent rect. 17 12
652 45.36 wind 1 90 < th dose independent rect. 4 23
659 45.37 wind 1 10 > th dose independent rect. 22 13
685 45.38 radiation 1 10 > th dose independent rect. 14 16
690 45.38 radiation 10 30 > th dose independent rect. 14 18
704 45.39 wind 5 10 > th dose independent rect. 14 3
711 45.39 humidity 90 90 > th dose dependent rect. 4 1
715 45.40 temperature 25 10 < th dose independent rect. 5 1
728 45.40 wind 1 90 > th dose independent rect. 17 21
729 45.40 atmosphere 1000 10 > th dose independent rect. 6 23
730 45.40 atmosphere 1000 10 > th dose independent rect. 17 23
736 45.41 atmosphere 1005 30 > th dose independent rect. 5 1
778 45.42 wind 1 10 > th dose independent rect. 24 11
779 45.42 wind 1 90 < th dose independent rect. 20 12
797 45.43 humidity 90 90 > th dose independent rect. 4 1
798 45.43 humidity 90 10 < th dose independent rect. 20 2
809 45.43 atmosphere 1000 30 > th dose independent rect. 17 21
847 45.45 wind 1 90 > th dose independent sin 7 NA
848 45.45 temperature 30 270 > th dose independent rect. 13 1
849 45.45 temperature 25 90 < th dose independent rect. 4 1
928 45.47 atmosphere 1000 10 < th dose independent rect. 16 17
978 45.48 wind 1 90 > th dose independent rect. 17 23
986 45.48 radiation 10 30 > th dose dependent rect. 16 15
989 45.49 wind 1 10 < th dose independent no NA NA