Os09g0308500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os09g0308500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.31 | 0.385 | -1680 | 10300 | 0.0924 | -493000 | 0.273 | 3020000 | -0.0153 | 8.93 | 995 | 10 | -- | -- |
| 67.81 | 0.386 | 3.14 | 0.0754 | 0.0856 | 2.03 | 0.26 | -- | -0.0164 | 9.1 | 994.8 | 9 | -- | -- |
| 68.53 | 0.386 | -1680 | 10300 | 0.0973 | -493000 | -- | 3020000 | -0.0159 | 7.92 | 995 | 10 | -- | -- |
| 67.93 | 0.384 | 3.14 | 0.0798 | 0.0953 | 2.05 | -- | -- | -0.0162 | 7.97 | 994.8 | 5 | -- | -- |
| 69.04 | 0.387 | -1680 | 10300 | -- | -493000 | -- | 3020000 | -0.0146 | -- | 995 | 10 | -- | -- |
| 71.9 | 0.398 | 3.14 | 0.0855 | 0.0749 | -- | 0.267 | -- | -0.0207 | 10.1 | -- | -- | -- | -- |
| 72.14 | 0.398 | 3.14 | 0.0948 | 0.0807 | -- | -- | -- | -0.0209 | 8.72 | -- | -- | -- | -- |
| 68.4 | 0.385 | 3.14 | 0.0833 | -- | 2.02 | -- | -- | -0.0152 | -- | 994.8 | 5 | -- | -- |
| 68.1 | 0.384 | 3.14 | -- | 0.0945 | 2.06 | -- | -- | -0.0253 | 7.85 | 994.8 | 5 | -- | -- |
| 72.51 | 0.398 | 3.15 | 0.095 | -- | -- | -- | -- | -0.0202 | -- | -- | -- | -- | -- |
| 72.37 | 0.398 | 3.15 | -- | 0.081 | -- | -- | -- | -0.0314 | 8.63 | -- | -- | -- | -- |
| 68.58 | 0.386 | 3.15 | -- | -- | 2.03 | -- | -- | -0.0244 | -- | 994.8 | 6 | -- | -- |
| 72.74 | 0.398 | 3.15 | -- | -- | -- | -- | -- | -0.0307 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.31 | humidity | 90.0 | 90 | > th | dose independent | rect. | 9 | 1 |
| 2 | 62.31 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 9 | 1 |
| 3 | 64.62 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 5 | 65.51 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 6 | 65.54 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 7 | 65.59 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 8 | 65.59 | wind | 5.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 10 | 65.60 | wind | 9.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 11 | 65.60 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 14 | 65.60 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 18 | 65.60 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 19 | 65.60 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 21 | 65.60 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 26 | 65.60 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 27 | 65.60 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 29 | 65.60 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 34 | 65.60 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 38 | 65.62 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 40 | 65.63 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 42 | 65.65 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 46 | 65.72 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 47 | 65.74 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 64 | 65.98 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 66 | 66.02 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 109 | 67.62 | atmosphere | 995.0 | 10 | > th | dose independent | sin | 5 | NA |
| 122 | 67.95 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 123 | 67.99 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 131 | 68.02 | wind | 1.0 | 90 | < th | dose independent | rect. | 16 | 1 |
| 132 | 68.02 | wind | 1.0 | 90 | < th | dose dependent | rect. | 16 | 1 |
| 137 | 68.06 | temperature | 30.0 | 30 | > th | dose dependent | rect. | 15 | 19 |
| 143 | 68.08 | temperature | 30.0 | 30 | > th | dose dependent | rect. | 15 | 4 |
| 178 | 68.14 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 179 | 68.15 | atmosphere | 995.0 | 10 | < th | dose independent | sin | 5 | NA |
| 180 | 68.15 | atmosphere | 995.0 | 90 | < th | dose independent | sin | 6 | NA |
| 182 | 68.15 | atmosphere | 995.0 | 10 | < th | dose independent | rect. | 18 | 22 |
| 184 | 68.15 | atmosphere | 995.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 185 | 68.15 | atmosphere | 995.0 | 30 | < th | dose dependent | sin | 5 | NA |
| 210 | 68.19 | atmosphere | 995.0 | 10 | < th | dose dependent | rect. | 18 | 22 |
| 221 | 68.22 | atmosphere | 995.0 | 90 | < th | dose independent | rect. | 14 | 1 |
| 222 | 68.22 | atmosphere | 995.0 | 10 | < th | dose independent | rect. | 15 | 1 |
| 538 | 68.37 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 23 |
| 544 | 68.41 | temperature | 30.0 | 30 | > th | dose dependent | sin | 12 | NA |
| 584 | 68.55 | atmosphere | 995.0 | 10 | < th | dose dependent | sin | 22 | NA |
| 611 | 68.61 | radiation | 20.0 | 10 | > th | dose independent | rect. | 8 | 2 |
| 685 | 68.77 | atmosphere | 995.0 | 10 | < th | dose dependent | no | NA | NA |
| 687 | 68.77 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 7 | 3 |
| 928 | 68.79 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 10 | 23 |
| 970 | 68.99 | temperature | 25.0 | 30 | > th | dose independent | rect. | 9 | 1 |
| 975 | 69.00 | temperature | 25.0 | 10 | > th | dose independent | rect. | 8 | 3 |