Os03g0689400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os03g0689400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 125.6 | 0.527 | 6.15 | -1.01 | 1.04 | 1.42 | 0.659 | -0.572 | -0.192 | 0.441 | 23.47 | 1225 | -- | -- |
| 125.75 | 0.522 | 6.14 | -0.858 | 1.04 | 1.37 | 0.617 | -- | -0.166 | 0.438 | 23.25 | 1225 | -- | -- |
| 127.36 | 0.526 | 6.15 | -0.954 | 1.03 | 1.42 | -- | -0.255 | -0.182 | 0.354 | 23.44 | 1220 | -- | -- |
| 127.36 | 0.526 | 6.14 | -0.881 | 1.04 | 1.39 | -- | -- | -0.16 | 0.36 | 23.39 | 1223 | -- | -- |
| 177.74 | 0.621 | 6.16 | -1.24 | -- | 2.02 | -- | -1.26 | -0.245 | -- | 23.88 | 1055 | -- | -- |
| 188.47 | 0.644 | 6.08 | -0.397 | 1.28 | -- | 0.875 | -- | 0.0984 | 0.628 | -- | -- | -- | -- |
| 191.71 | 0.648 | 6.08 | -0.429 | 1.28 | -- | -- | -- | 0.0945 | 0.556 | -- | -- | -- | -- |
| 178.38 | 0.622 | 6.13 | -0.95 | -- | 1.91 | -- | -- | -0.175 | -- | 23.7 | 1046 | -- | -- |
| 146.04 | 0.563 | 6.1 | -- | 1.04 | 1.2 | -- | -- | -0.00666 | 0.392 | 23.85 | 1194 | -- | -- |
| 294.05 | 0.801 | 6.06 | -0.384 | -- | -- | -- | -- | 0.116 | -- | -- | -- | -- | -- |
| 196.56 | 0.656 | 6.07 | -- | 1.27 | -- | -- | -- | 0.142 | 0.539 | -- | -- | -- | -- |
| 200.44 | 0.659 | 6.09 | -- | -- | 1.7 | -- | -- | -0.0286 | -- | 23.9 | 1041 | -- | -- |
| 297.95 | 0.806 | 6.05 | -- | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 2 | 125.49 | temperature | 20 | 720 | > th | dose dependent | sin | 14 | NA |
| 34 | 127.70 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 35 | 127.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 16 |
| 41 | 127.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 112 | 128.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 120 | 128.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 127 | 128.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 22 |
| 149 | 128.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 22 |
| 151 | 128.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 157 | 128.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 162 | 128.76 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 171 | 128.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 227 | 128.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 229 | 128.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 248 | 129.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 280 | 129.14 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 286 | 129.16 | radiation | 1 | 4320 | > th | dose dependent | rect. | 18 | 12 |
| 293 | 129.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 15 |
| 330 | 129.27 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 341 | 129.28 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 18 |
| 463 | 129.45 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 670 | 129.67 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 715 | 129.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 729 | 129.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 794 | 129.82 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 795 | 129.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 11 |
| 807 | 129.84 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 824 | 129.87 | temperature | 25 | 1440 | > th | dose dependent | sin | 4 | NA |
| 904 | 129.94 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 964 | 130.02 | radiation | 1 | 4320 | < th | dose independent | rect. | 15 | 15 |