BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0459300 Os11g0459300|Os11g0459300
(450 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0459300 Bacterial luciferase-like family protein 684 0.0
Os04g0105900 108 1e-23
Os07g0122000 Protein of unknown function DUF1719, Oryza sat... 107 3e-23
Os07g0121600 Protein of unknown function DUF1719, Oryza sat... 101 9e-22
Os07g0121100 Protein of unknown function DUF1719, Oryza sat... 101 1e-21
Os07g0122200 Protein of unknown function DUF1719, Oryza sat... 100 2e-21
Os07g0122300 Protein of unknown function DUF1719, Oryza sat... 97 3e-20
Os07g0122100 Protein of unknown function DUF1719, Oryza sat... 74 2e-13
>Os11g0459300 Bacterial luciferase-like family protein
Length = 450
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/450 (81%), Positives = 366/450 (81%)
Query: 1 MQRPSVVEIVGSAVVGEAVGRICSYLISRXXXXXXXXXXXXXXXXRMEVALLRIQAAVEE 60
MQRPSVVEIVGSAVVGEAVGRICSYLISR RMEVALLRIQAAVEE
Sbjct: 1 MQRPSVVEIVGSAVVGEAVGRICSYLISRGEEEVAAGDGAEHDEERMEVALLRIQAAVEE 60
Query: 61 ADGWHITNRPLVRWRDKLKRAADEGXXXXXXXXXXXXXXXXXXXXXXXXLWFPRRVXXXX 120
ADGWHITNRPLVRWRDKLKRAADEG LWFPRRV
Sbjct: 61 ADGWHITNRPLVRWRDKLKRAADEGECVLREYRRRRRRRLCVADDDARRLWFPRRVARAA 120
Query: 121 XXXXXXXXXXDEQRLSGGTVRRFERLADGVGDFVKLVESGGRAKRFVPFQPVAASLLARR 180
DEQRLSGGTVRRFERLADGVGDFVKLVESGGRAKRFVPFQPVAASLLARR
Sbjct: 121 GKKLFAFGGGDEQRLSGGTVRRFERLADGVGDFVKLVESGGRAKRFVPFQPVAASLLARR 180
Query: 181 AVSFSVKPPASPGATAHAFAFPDLTSPWRRPRAHVVFLYADGGGTGEKLELFVELDLSES 240
AVSFSVKPPASPGATAHAFAFPDLTSPWRRPRAHVVFLYADGGGTGEKLELFVELDLSES
Sbjct: 181 AVSFSVKPPASPGATAHAFAFPDLTSPWRRPRAHVVFLYADGGGTGEKLELFVELDLSES 240
Query: 241 ADVMALALSSMDALPPXXXXXXXXXXXXXXXLQAMTQDDGGGDHLPAWDAHYCSQPSRYE 300
ADVMALALSSMDALPP LQAMTQDDGGGDHLPAWDAHYCSQPSRYE
Sbjct: 241 ADVMALALSSMDALPPHFRFASAAAFGSFHRLQAMTQDDGGGDHLPAWDAHYCSQPSRYE 300
Query: 301 QPEWMAAGYGDEPASVAALPEHVLYVVAEWDSXXXXXXXXXXXXXXXVHVSYHLGRQGAD 360
QPEWMAAGYGDEPASVAALPEHVLYVVAEWDS VHVSYHLGRQGAD
Sbjct: 301 QPEWMAAGYGDEPASVAALPEHVLYVVAEWDSPARDAPRTTPPPPPPVHVSYHLGRQGAD 360
Query: 361 WAVRREEMARRIMDGRFGTRARRVERHVDAGAETFNGVVMCTVDGFRRRSEAAVAVAGQV 420
WAVRREEMARRIMDGRFGTRARRVERHVDAGAETFNGVVMCTVDGFRRRSEAAVAVAGQV
Sbjct: 361 WAVRREEMARRIMDGRFGTRARRVERHVDAGAETFNGVVMCTVDGFRRRSEAAVAVAGQV 420
Query: 421 VRWCFVSGWVVYLSVRGVGAGQPYEVGFQG 450
VRWCFVSGWVVYLSVRGVGAGQPYEVGFQG
Sbjct: 421 VRWCFVSGWVVYLSVRGVGAGQPYEVGFQG 450
>Os04g0105900
Length = 547
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 117/250 (46%), Gaps = 9/250 (3%)
Query: 8 EIVGSAVVGEAVGRICSYLISRXXXXXXXXXXXXXXXXRMEVALLRIQAAVEEADGWHIT 67
E V SA+VGEA+ I S +IS+ R+E+A ++++AA++ ++ W IT
Sbjct: 13 ETVRSAIVGEAIRGIFSGVISKYEDNSNEGDNIE----RLEMAQIKLEAAIKTSNKWQIT 68
Query: 68 NRPLVRWRDKLKRAADEGXXXXXXXXXXXXXXXXXXXXXXXXLWFPRRVXXXXXXXXXXX 127
+ PL+RW+ KLKRA++E FPRRV
Sbjct: 69 DTPLLRWQKKLKRASEECDDTLRKCKQRALEEKEIEVQVKQS-SFPRRVAHATKSFIVSF 127
Query: 128 X-XXDEQRLSGGTVRRFERLADGVGDFVKLVESGGRAKRFVPFQPVAASLLARRAVSFSV 186
++ S VRRFER+AD F++ V+ GGR ++++ F P+ A L A +++ +
Sbjct: 128 IGHNNDDYSSSAIVRRFERIADSADSFLRFVQLGGRPRQYLFFDPLIAHLFAGKSLRYQT 187
Query: 187 KPPASPGATAHAFAFPDLTSPWRRPRAHVVFLYADGGGTGEKLELFVELDLSESADVMAL 246
G+ H F+ ++ R A + F+Y D L L LSES DVM +
Sbjct: 188 ---LHDGSQYHFFSIRPMSFEERGLEAMLFFVYEDCKVPKNSFRLGFILRLSESTDVMGI 244
Query: 247 ALSSMDALPP 256
+ + ++ P
Sbjct: 245 TVKCLQSVTP 254
>Os07g0122000 Protein of unknown function DUF1719, Oryza sativa family protein
Length = 414
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 109/249 (43%), Gaps = 9/249 (3%)
Query: 8 EIVGSAVVGEAVGRICSYLISRXXXXXXXXXXXXXXXXRMEVALLRIQAAVEEADGWHIT 67
EIVGSA+V E V RI S LI R R+E+A ++++ A+E ++ W IT
Sbjct: 3 EIVGSAIVQETVNRIISGLIDRCERKSSARDHLE----RLEMAQIKLEFALETSNKWQIT 58
Query: 68 NRPLVRWRDKLKRAADEGXXXXXXXXXXXXXXXXXXXXXXXXLWFPRRVXXXXXXXXXXX 127
+ PL+RW+ KLKRA +E FPRR+
Sbjct: 59 SGPLLRWQKKLKRATEECDDTLRKCRQHIQEEDEVEQQVRNSS-FPRRIAHATKTLVSSI 117
Query: 128 XXXDEQRLSGGTVRRFERLADGVGDFVKLVESGGRAKRFVPFQPVAASLLARRAVSFSVK 187
+ L +V+RFE ADG DF++ VE GG +R++ F P+ L++ + +
Sbjct: 118 FHSNSDELGRSSVQRFEWFADGANDFLRSVEFGGTPRRYLFFDPLIGHLISGETLEYK-- 175
Query: 188 PPASPGATAHAFAFPDLTSPWRRPRAHVVFLYADGGGTGEKLELFVELDLSESADVMALA 247
+ G H F S R A + F + DG + + + L LSES +++
Sbjct: 176 --SIQGNKQHWFWVRPNNSAERGIEAKLFFAFNDGSAPEDNFYIDIILQLSESTNIVGTT 233
Query: 248 LSSMDALPP 256
+ + P
Sbjct: 234 IKCLQLFTP 242
>Os07g0121600 Protein of unknown function DUF1719, Oryza sativa family protein
Length = 606
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 109/249 (43%), Gaps = 10/249 (4%)
Query: 8 EIVGSAVVGEAVGRICSYLISRXXXXXXXXXXXXXXXXRMEVALLRIQAAVEEADGWHIT 67
E+VGSA+V E V +I S I R R+E+A +++ A+E ++ W IT
Sbjct: 98 EVVGSAIVHETVNKIVSGFIDRCERKSSAQDNLE----RLEMAQIKLDFALETSNKWQIT 153
Query: 68 NRPLVRWRDKLKRAADEGXXXXXXXXXXXXXXXXXXXXXXXXLWFPRRVXXXXXXXXXXX 127
+ PL+RW+ KLKRA +E +FPRR+
Sbjct: 154 SGPLLRWQKKLKRATEECDDTIRMCRQRVQEEQEAEQVARNS-FFPRRIAHATKSLISSI 212
Query: 128 XXXDEQRLSGGTVRRFERLADGVGDFVKLVESGGRAKRFVPFQPVAASLLARRAVSFSVK 187
+ S VRRFE ADG DF++ VE GG + ++ F P+ LLA + + V+
Sbjct: 213 FHGNIDEPSRSVVRRFEWFADGANDFLRSVEYGGTPRHYLFFDPLIGHLLAGETLEYIVQ 272
Query: 188 PPASPGATAHAFAFPDLTSPWRRPRAHVVFLYADGGGTGEKLELFVELDLSESADVMALA 247
G F R +A ++F+Y+DG + L + L LSES +++
Sbjct: 273 -----GNRQLLFWIQPNNIAERGVQAMLLFVYSDGTASEGNFILGMLLQLSESTNIVGTI 327
Query: 248 LSSMDALPP 256
+ + P
Sbjct: 328 IKGLQLFTP 336
>Os07g0121100 Protein of unknown function DUF1719, Oryza sativa family protein
Length = 510
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 108/256 (42%), Gaps = 24/256 (9%)
Query: 8 EIVGSAVVGEAVGRICSYLISRXXXXXXXXXXXXXXXXRMEVALLRIQAAVEEADGWHIT 67
E+V SA+V E V +I S +I + R+E+A +++ A+E + W I
Sbjct: 3 EVVSSALVHETVNKIISGMIDKYERKSSAQEHMD----RLEMAQIKLDLALETSKKWQII 58
Query: 68 NRPLVRWRDKLKRAADEGXXXXXXXXXXXXXXXXXXXXXXXXLWFPRRVXXXXXXXXXXX 127
+ PL+RW+ KLKR A+E +FPRR+
Sbjct: 59 SEPLLRWQKKLKRVAEECDDTIRMCRQRVQEEQEAKQVARDS-FFPRRIAHATKSLISSI 117
Query: 128 XXXDEQRLSGGTVRRFERLADGVGDFVKLVESGGRAKRFVPFQPVAASLLARRAVSFSVK 187
+ + TVRRFE ADG DF++ VESGG +R++ F P+ LLA + + +
Sbjct: 118 FYGNIDEPTRSTVRRFEWFADGANDFLRSVESGGTPRRYLFFDPLIGHLLAGEMLEYKL- 176
Query: 188 PPASPGATAHAFAFPDLTSPWRRPR-------AHVVFLYADGGGTGEKLELFVELDLSES 240
G H F W RP V F+Y DG + L + L +SES
Sbjct: 177 ---VQGNKQHLF--------WIRPNNIAERIEGMVFFVYNDGTAPEDNFFLGMILQISES 225
Query: 241 ADVMALALSSMDALPP 256
+++ + + P
Sbjct: 226 TNIVGTIIKCLQLFAP 241
>Os07g0122200 Protein of unknown function DUF1719, Oryza sativa family protein
Length = 507
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 107/249 (42%), Gaps = 9/249 (3%)
Query: 8 EIVGSAVVGEAVGRICSYLISRXXXXXXXXXXXXXXXXRMEVALLRIQAAVEEADGWHIT 67
EIV AVV E V +I S L+ + R+E+A ++++ A+E ++ W IT
Sbjct: 3 EIVSYAVVHETVNKIISGLVDKYERKSSAEEQME----RLEMAQIKLEIALETSNKWQIT 58
Query: 68 NRPLVRWRDKLKRAADEGXXXXXXXXXXXXXXXXXXXXXXXXLWFPRRVXXXXXXXXXXX 127
+ PL+RW+ KLKRAA+E FP+R+
Sbjct: 59 SGPLLRWQKKLKRAAEECDDTLRKCRQRVEEEEEVEQQVRNSS-FPKRIAHATKSMISSI 117
Query: 128 XXXDEQRLSGGTVRRFERLADGVGDFVKLVESGGRAKRFVPFQPVAASLLARRAVSFSVK 187
+ + +VRRFE A+G DF++ VE GG R+ F P+ LLA + +
Sbjct: 118 FHGNIDEPTVSSVRRFEWFAEGANDFLRSVEFGGTPHRYSFFDPLIGHLLAGETLEYK-- 175
Query: 188 PPASPGATAHAFAFPDLTSPWRRPRAHVVFLYADGGGTGEKLELFVELDLSESADVMALA 247
+ G H F RR A ++F+Y D + L + L LSES +++
Sbjct: 176 --SVQGNKQHLFWIRPNNISERRVEAKLIFIYNDCSAPEDNFFLGMMLQLSESTNIVGTT 233
Query: 248 LSSMDALPP 256
+ + P
Sbjct: 234 IRCLQLFSP 242
>Os07g0122300 Protein of unknown function DUF1719, Oryza sativa family protein
Length = 513
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 105/257 (40%), Gaps = 25/257 (9%)
Query: 8 EIVGSAVVGEAVGRICSYLISRXXXXXXXXXXXXXXXXRMEVALLRIQAAVEEADGWHIT 67
EIV SA+V E V +I S +I R+E+A ++++ A+E + W IT
Sbjct: 3 EIVSSAIVTETVNKIISGMIDNYEQKLSADELME----RLEMAQIKLELALETSSKWQIT 58
Query: 68 NRPLVRWRDKLKRAADEGXXXXXXXXXXXXXXXXXXXXXXXXLWFPRRVXXXXXXXXXXX 127
+ PL+RW+ KLKRA +E FPRR+
Sbjct: 59 SEPLLRWQKKLKRATEECDDTLRKCRQHVQEEEEKEQQVRNSS-FPRRIACATKSLISSI 117
Query: 128 XXXDEQRLSGGTVRRFERLADGVGDFVKLVESGGRAKRFVPFQPVAASLLARRAVSFSVK 187
+ S TV+RFE A G DF+K +E GG +R++ F P+ LLA + +
Sbjct: 118 FHGNIDEPSRSTVQRFEWFAKGADDFLKSLEFGGTPRRYLFFDPLIGHLLAGETLEYKF- 176
Query: 188 PPASPGATAHAFAFPDLTSPWRRPR--------AHVVFLYADGGGTGEKLELFVELDLSE 239
G H F W RP A ++F+Y D L + L +SE
Sbjct: 177 ---VQGNKQHLF--------WIRPNDIADRGVEAKLIFVYNDCSAPENNFFLGMMLQISE 225
Query: 240 SADVMALALSSMDALPP 256
S +++ + + P
Sbjct: 226 STNIIGTIIKCLQWFTP 242
>Os07g0122100 Protein of unknown function DUF1719, Oryza sativa family protein
Length = 458
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 13/251 (5%)
Query: 8 EIVGSAVVGEAVGRICSYLISRXXXXXXXXXXXXXXXXRMEVALLRIQAAVEEADGWH-I 66
E+V SAVVGEAV R+ ++ + + R+E+A +R++AA+E + W +
Sbjct: 3 EVVASAVVGEAVSRVSTFFVDKHKRKLSEEDGLE----RLEMAHIRMEAALEMSGKWPPV 58
Query: 67 TNRPLVRWRDKLKRAADEGXXXXXXXXXXXXXXXXXXXXXXXXLWFPRRVXXXXXXXXXX 126
T+ L+RWR KLK A++E FPRR+
Sbjct: 59 TDASLLRWRKKLKCASEE-CSQVMNRCKRRAMEDDEMEQQIRRCSFPRRIAHETRSFFSS 117
Query: 127 XXXXD--EQRLSGGTVRRFERLADGVGDFVKLVESGGRAK-RFVPFQPVAASLLARRAVS 183
+ ++ T++RFER ADG G+F++ ++ G ++ P+ LLA +A+
Sbjct: 118 FSGDKNVDSLITTSTIQRFERFADGAGEFLRFLQFGSIGSINYMLVDPLTGPLLAGKALQ 177
Query: 184 FSVKPPASPGATAHAFAFPDLTSPWRRPRAHVVFLYADGGGTGEKLELFVELDLSESADV 243
F PG + + A L R A V Y + E L + + ++ S +V
Sbjct: 178 FE----NPPGISGYYLAARPLRFAERGVVACVFLQYKNHERPEENFLLGILIRVTASTNV 233
Query: 244 MALALSSMDAL 254
+ + + L
Sbjct: 234 VGIMARCSEKL 244
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,213,003
Number of extensions: 568030
Number of successful extensions: 1438
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1425
Number of HSP's successfully gapped: 9
Length of query: 450
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 346
Effective length of database: 11,605,545
Effective search space: 4015518570
Effective search space used: 4015518570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)