Os07g0122100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1719, Oryza sativa family protein.
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Os07g0122100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1719, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 355.27 | 0.886 | 9 | 2.62 | 0.106 | 1.48 | 0.954 | -20.9 | 1.51 | 22.3 | 33.6 | 802 | -- | -- |
| 373.26 | 0.907 | 8.74 | 4.49 | 0.133 | -0.487 | -0.68 | -- | 1.69 | 11.7 | 20.34 | 3124 | -- | -- |
| 358.62 | 0.882 | 8.99 | 2.67 | 0.121 | 1.48 | -- | -20.8 | 1.52 | 20.2 | 33.62 | 786 | -- | -- |
| 369.54 | 0.895 | 8.78 | 4.73 | 0.067 | -1.43 | -- | -- | 1.67 | 11.6 | 35 | 676 | -- | -- |
| 359.35 | 0.883 | 8.99 | 2.65 | -- | 1.53 | -- | -20.8 | 1.52 | -- | 33.66 | 788 | -- | -- |
| 383.2 | 0.918 | 8.76 | 4.36 | 0.0216 | -- | -0.694 | -- | 1.6 | 12.1 | -- | -- | -- | -- |
| 385.17 | 0.919 | 8.77 | 4.33 | 0.0516 | -- | -- | -- | 1.6 | 7.97 | -- | -- | -- | -- |
| 362.9 | 0.887 | 8.76 | 4.55 | -- | -1.39 | -- | -- | 1.63 | -- | 35.1 | 924 | -- | -- |
| 878.54 | 1.38 | 8.86 | -- | 0.106 | -0.312 | -- | -- | 1.16 | 0.237 | 33.8 | 668 | -- | -- |
| 385.32 | 0.917 | 8.77 | 4.33 | -- | -- | -- | -- | 1.6 | -- | -- | -- | -- | -- |
| 880.23 | 1.39 | 8.87 | -- | 0.114 | -- | -- | -- | 1.11 | 4.95 | -- | -- | -- | -- |
| 875.51 | 1.38 | 8.85 | -- | -- | -0.937 | -- | -- | 1.13 | -- | 35.1 | 586 | -- | -- |
| 880.91 | 1.39 | 8.88 | -- | -- | -- | -- | -- | 1.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 341.19 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 7 | 346.17 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 8 | 347.36 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 18 | 347.67 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 14 | 8 |
| 33 | 349.47 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 34 | 349.65 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 36 | 349.85 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 10 | 12 |
| 38 | 349.93 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 10 |
| 40 | 350.00 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 49 | 350.43 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 58 | 350.75 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 63 | 350.80 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 85 | 351.66 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 117 | 351.85 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 123 | 351.99 | atmosphere | 995 | 14400 | < th | dose independent | sin | 22 | NA |
| 165 | 352.34 | atmosphere | 995 | 720 | > th | dose independent | rect. | 12 | 9 |
| 167 | 352.35 | atmosphere | 995 | 720 | > th | dose independent | rect. | 9 | 15 |
| 168 | 352.37 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 171 | 352.37 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 196 | 352.66 | atmosphere | 995 | 14400 | > th | dose independent | sin | 22 | NA |
| 238 | 354.07 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 243 | 354.15 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 254 | 354.61 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 288 | 355.42 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 298 | 355.81 | wind | 1 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 317 | 356.28 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 17 | 8 |
| 326 | 356.56 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 335 | 356.74 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 336 | 356.74 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 15 |
| 344 | 356.84 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 346 | 356.85 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 349 | 356.89 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 15 |
| 355 | 356.96 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 371 | 357.02 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 376 | 357.06 | atmosphere | 995 | 720 | > th | dose independent | rect. | 12 | 18 |
| 377 | 357.06 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 378 | 357.06 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 380 | 357.07 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 392 | 357.12 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 396 | 357.14 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 14 | NA |
| 398 | 357.14 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 401 | 357.15 | atmosphere | 995 | 720 | > th | dose independent | rect. | 1 | 23 |
| 410 | 357.17 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 13 |
| 452 | 357.34 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 16 | 11 |
| 457 | 357.37 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 490 | 357.46 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 17 |
| 501 | 357.48 | atmosphere | 995 | 720 | > th | dose independent | rect. | 18 | 23 |
| 502 | 357.48 | atmosphere | 1000 | 14400 | < th | dose dependent | sin | 13 | NA |
| 507 | 357.50 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 523 | 357.53 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 593 | 357.63 | radiation | 20 | 270 | > th | dose dependent | rect. | 16 | 15 |
| 661 | 357.81 | humidity | 50 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 679 | 357.84 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 14 | NA |
| 681 | 357.84 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 19 | 19 |
| 693 | 357.87 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 743 | 357.95 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 752 | 357.96 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 15 |
| 753 | 357.96 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 19 | 15 |
| 768 | 357.98 | radiation | 20 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 799 | 358.01 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 812 | 358.02 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 819 | 358.03 | wind | 5 | 1440 | > th | dose independent | rect. | 1 | 13 |
| 824 | 358.04 | wind | 5 | 1440 | < th | dose independent | rect. | 1 | 13 |
| 878 | 358.10 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 13 | 22 |
| 881 | 358.11 | atmosphere | 995 | 720 | > th | dose independent | rect. | 1 | 15 |
| 972 | 358.20 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 8 | 18 |