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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0459300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Bacterial luciferase-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.05 (0.0449) R2 : 0.498
β1 : 0.927 (0.164) R2dD : 0.0366 R2D : -0.00359
β2 : 0.937 (0.143) R2dC : 0.078 R2C : 0.195
β3 : 1.15 (0.117) R2dE : 0.173 R2E : 0.299
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.839 (0.0955) R2dN8 : 0.114 R2N8 : 0.0649
σ : 0.837
deviance : 322.87
__
_____
C
peak time of C : 20.7
E
wheather : radiation
threshold : 20
memory length : 9
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
317.57 0.837 5.05 0.903 0.939 1.14 0.809 -1.37 0.834 20.9 20 10 -- --
322.26 0.836 5.06 0.896 0.961 1.14 -0.327 -- 0.845 20.8 20 9 -- --
318.54 0.831 5.05 0.882 0.932 1.16 -- -0.885 0.839 20.8 20.01 9 -- --
322.87 0.837 5.05 0.927 0.937 1.15 -- -- 0.839 20.7 20 9 -- --
346.2 0.867 5.03 0.885 -- 1.61 -- -0.916 0.843 -- 16.01 9 -- --
345.61 0.872 5.08 0.878 1.93 -- -0.439 -- 0.824 22.6 -- -- -- --
346.4 0.872 5.08 0.896 1.94 -- -- -- 0.825 22.6 -- -- -- --
350.47 0.872 5.02 0.896 -- 1.58 -- -- 0.847 -- 13.36 9 -- --
345.5 0.866 5.08 -- 0.938 1.14 -- -- 0.737 20.8 19.96 9 -- --
576.89 1.12 5.03 0.93 -- -- -- -- 0.834 -- -- -- -- --
367.54 0.897 5.1 -- 1.94 -- -- -- 0.725 22.6 -- -- -- --
371.55 0.898 5.05 -- -- 1.58 -- -- 0.75 -- 12.77 9 -- --
599.73 1.14 5.05 -- -- -- -- -- 0.731 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 312.95 temperature 25 30 > th dose independent rect. 4 4
2 312.97 radiation 20 10 < th dose dependent rect. 6 23
6 313.67 temperature 25 30 > th dose independent rect. 2 6
16 315.62 temperature 20 90 > th dose dependent rect. 3 5
20 316.12 radiation 30 30 < th dose dependent rect. 12 22
31 316.95 radiation 20 30 < th dose independent rect. 6 23
37 317.89 radiation 20 30 < th dose independent rect. 12 23
40 317.93 radiation 20 10 < th dose dependent rect. 23 23
46 318.27 radiation 20 10 < th dose dependent no NA NA
50 318.58 radiation 20 10 < th dose dependent rect. 15 23
52 318.68 temperature 20 270 > th dose dependent rect. 4 1
54 318.92 radiation 20 10 < th dose dependent rect. 9 23
56 319.07 radiation 10 30 > th dose independent rect. 7 11
77 319.48 radiation 20 30 < th dose dependent rect. 6 14
84 319.65 radiation 20 10 < th dose dependent rect. 17 23
101 320.10 humidity 70 30 > th dose independent rect. 12 21
103 320.11 humidity 70 10 > th dose independent rect. 13 19
104 320.11 radiation 20 10 < th dose dependent sin 0 NA
117 320.38 radiation 20 10 < th dose dependent rect. 3 23
139 320.59 radiation 10 10 > th dose independent rect. 9 23
144 320.64 radiation 20 30 < th dose dependent rect. 6 12
153 320.89 radiation 10 10 > th dose independent rect. 13 23
159 321.05 radiation 10 10 > th dose independent no NA NA
247 321.23 radiation 10 10 > th dose independent rect. 17 23
257 321.42 humidity 70 90 < th dose dependent rect. 12 23
260 321.45 radiation 10 30 > th dose independent rect. 9 9
281 321.56 radiation 10 10 > th dose independent sin 0 NA
306 321.77 radiation 20 10 < th dose independent rect. 6 14
323 321.98 radiation 10 10 < th dose independent rect. 23 23
327 322.07 humidity 80 4320 > th dose independent rect. 4 1
332 322.11 humidity 80 4320 < th dose independent rect. 4 1
342 322.29 humidity 80 4320 < th dose dependent rect. 4 1
350 322.45 radiation 20 10 < th dose dependent rect. 6 9
351 322.47 humidity 80 4320 > th dose independent rect. 3 4
371 322.54 humidity 80 4320 < th dose dependent rect. 3 4
379 322.64 temperature 20 270 > th dose independent rect. 4 1
399 322.73 radiation 10 10 < th dose independent rect. 17 23
403 322.78 humidity 80 4320 < th dose independent rect. 3 4
444 323.09 radiation 20 10 < th dose dependent rect. 1 23
457 323.25 radiation 20 10 < th dose dependent rect. 21 23
462 323.31 radiation 10 10 < th dose independent no NA NA
464 323.32 radiation 10 10 < th dose independent rect. 9 23
466 323.33 radiation 10 10 < th dose independent sin 1 NA
472 323.36 humidity 70 720 < th dose independent rect. 18 22
479 323.45 radiation 10 10 < th dose independent rect. 15 23
480 323.46 radiation 20 10 < th dose independent rect. 13 19
484 323.50 temperature 20 30 > th dose dependent rect. 6 2
486 323.52 humidity 80 720 < th dose dependent rect. 20 19
488 323.53 humidity 70 270 > th dose independent rect. 24 18
544 323.91 humidity 70 720 < th dose independent rect. 6 10
565 324.00 humidity 70 720 > th dose independent rect. 19 20
566 324.01 radiation 10 10 < th dose independent rect. 6 9
575 324.11 humidity 70 90 > th dose independent rect. 3 17
579 324.13 humidity 80 10 > th dose independent rect. 6 14
607 324.45 radiation 10 10 < th dose independent rect. 3 23
617 324.53 humidity 70 720 < th dose independent rect. 9 7
618 324.53 humidity 70 720 > th dose independent rect. 19 23
645 324.62 wind 3 4320 > th dose dependent rect. 20 1
656 324.69 humidity 70 720 > th dose independent rect. 6 23
664 324.74 humidity 70 720 > th dose independent rect. 17 22
667 324.77 temperature 25 4320 > th dose independent rect. 4 1
671 324.78 radiation 10 90 > th dose independent rect. 13 23
690 324.86 radiation 20 10 < th dose independent rect. 3 17
722 324.98 humidity 70 90 < th dose independent rect. 13 22
731 325.06 humidity 70 720 < th dose independent sin 3 NA
734 325.07 radiation 10 90 > th dose independent no NA NA
814 325.08 humidity 50 10 > th dose dependent rect. 6 14
867 325.25 humidity 80 720 < th dose dependent sin 4 NA
881 325.31 humidity 60 10 > th dose dependent rect. 12 22
882 325.32 humidity 70 720 > th dose independent rect. 6 18
884 325.33 humidity 60 10 > th dose dependent rect. 12 8
889 325.36 radiation 20 10 < th dose dependent rect. 3 17
895 325.39 humidity 70 720 > th dose independent rect. 1 23
926 325.47 humidity 80 720 < th dose dependent rect. 9 6
937 325.52 humidity 80 14400 > th dose dependent rect. 4 1
948 325.60 humidity 70 30 > th dose independent rect. 12 8
981 325.77 radiation 20 720 > th dose independent rect. 13 19
985 325.79 radiation 20 10 < th dose dependent rect. 19 23
987 325.80 humidity 70 90 > th dose independent rect. 23 22