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Os07g0122300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1719, Oryza sativa family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.08 (0.0341) R2 : 0.372
β1 : 0.704 (0.126) R2dD : 0.0461 R2D : -0.0708
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.36 (0.182) R2dE : 0.0846 R2E : -0.0384
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.17 (0.658) R2dD*E : 0.133 R2D*E : 0.0287
γ1 : 0.89 (0.0724) R2dN8 : 0.281 R2N8 : 0.192
σ : 0.632
deviance : 184.02
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C
peak time of C : --
E
wheather : radiation
threshold : 47.57
memory length : 4005
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
174.22 0.62 6.1 0.735 0.44 1.34 0.2 6.27 0.889 17.4 47.58 4191 -- --
204.98 0.667 6.07 0.712 0.332 0.898 -0.192 -- 0.877 17.7 30 3985 -- --
174.23 0.615 6.09 0.737 0.439 1.34 -- 6.3 0.899 17.4 47.45 4136 -- --
201.18 0.661 6.05 0.544 0.351 0.89 -- -- 0.812 17.4 10.16 4004 -- --
184.02 0.632 6.08 0.704 -- 1.36 -- 6.17 0.89 -- 47.57 4005 -- --
222.07 0.699 6.05 0.442 0.411 -- 0.0582 -- 0.899 18.4 -- -- -- --
222.08 0.698 6.05 0.441 0.411 -- -- -- 0.899 18.4 -- -- -- --
204.71 0.666 6.06 0.523 -- 1.14 -- -- 0.794 -- -0.0001087 3755 -- --
206.58 0.669 6.08 -- 0.313 1.04 -- -- 0.753 16.5 -0.0001683 3993 -- --
230.84 0.71 6.05 0.43 -- -- -- -- 0.89 -- -- -- -- --
227.21 0.705 6.06 -- 0.405 -- -- -- 0.85 18.4 -- -- -- --
210.84 0.676 6.08 -- -- 1.09 -- -- 0.742 -- -1.879 3755 -- --
235.73 0.717 6.06 -- -- -- -- -- 0.842 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.37 radiation 1 4320 > th dose dependent rect. 18 12
2 169.78 radiation 1 4320 > th dose dependent rect. 5 1
13 170.53 temperature 30 1440 > th dose dependent rect. 8 1
27 170.64 radiation 40 4320 < th dose dependent rect. 18 12
30 170.80 temperature 30 4320 > th dose independent rect. 8 1
60 171.22 radiation 40 4320 < th dose dependent rect. 4 2
64 171.43 temperature 30 4320 < th dose independent rect. 4 5
68 171.53 radiation 10 4320 < th dose independent rect. 16 15
76 172.00 radiation 20 4320 < th dose dependent rect. 1 5
87 172.22 temperature 30 4320 < th dose independent rect. 21 12
90 172.24 radiation 10 4320 > th dose dependent rect. 16 16
91 172.25 temperature 30 4320 < th dose independent rect. 19 14
101 172.47 radiation 20 4320 < th dose dependent rect. 22 8
116 172.56 temperature 30 4320 < th dose independent rect. 8 1
119 172.57 radiation 40 4320 < th dose independent rect. 14 19
135 173.13 radiation 10 4320 > th dose independent rect. 16 15
146 173.85 radiation 30 4320 > th dose dependent rect. 14 19
147 173.86 radiation 40 4320 < th dose dependent rect. 17 6
148 173.90 radiation 30 4320 < th dose independent sin 12 NA
149 173.98 radiation 40 4320 < th dose dependent rect. 17 4
169 174.30 radiation 10 4320 < th dose dependent rect. 17 6
173 174.34 radiation 10 4320 < th dose dependent rect. 17 4
177 174.36 radiation 40 4320 < th dose dependent rect. 17 9
178 174.38 radiation 10 4320 > th dose dependent sin 12 NA
182 174.41 radiation 10 4320 < th dose dependent rect. 17 9
184 174.43 radiation 30 4320 > th dose dependent sin 12 NA
187 174.44 radiation 40 4320 < th dose dependent rect. 16 15
192 174.50 radiation 1 4320 > th dose dependent rect. 17 2
208 174.55 radiation 10 4320 < th dose independent sin 13 NA
231 174.79 radiation 40 4320 < th dose independent rect. 17 16
232 174.80 radiation 40 4320 < th dose independent rect. 4 5
248 175.11 radiation 40 4320 < th dose independent rect. 1 8
255 175.32 radiation 40 4320 < th dose independent rect. 22 11
269 175.50 radiation 10 4320 < th dose dependent rect. 13 18
277 175.61 radiation 10 4320 < th dose dependent rect. 11 20
291 175.89 radiation 10 4320 < th dose dependent sin 14 NA
320 176.37 radiation 10 4320 < th dose independent rect. 16 22
323 176.41 radiation 40 4320 < th dose dependent sin 13 NA
346 176.66 radiation 10 4320 < th dose independent rect. 4 3
348 176.68 radiation 30 4320 > th dose dependent rect. 7 2
381 176.73 radiation 10 4320 < th dose independent rect. 19 12
383 176.74 radiation 20 4320 > th dose independent sin 12 NA
391 176.82 radiation 10 4320 < th dose independent rect. 22 9
410 176.92 radiation 30 4320 > th dose independent rect. 15 18
435 177.18 radiation 40 4320 > th dose dependent rect. 12 23
446 177.32 radiation 40 4320 > th dose independent rect. 7 2
472 177.39 radiation 40 4320 < th dose independent rect. 14 9
480 177.44 radiation 40 4320 < th dose independent rect. 14 7
506 177.52 radiation 40 4320 < th dose independent rect. 14 12
517 177.57 radiation 40 4320 < th dose independent rect. 14 2
552 177.72 radiation 40 4320 > th dose dependent rect. 7 8
581 177.77 radiation 40 4320 > th dose dependent no NA NA
876 178.13 radiation 1 4320 < th dose independent rect. 18 5
898 178.22 radiation 1 4320 < th dose independent rect. 18 3
916 178.34 radiation 1 4320 > th dose independent rect. 18 11
949 178.44 radiation 1 4320 < th dose independent rect. 18 8
953 178.46 radiation 1 4320 > th dose independent rect. 18 1
969 178.50 temperature 10 4320 > th dose dependent rect. 13 1