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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0122000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1719, Oryza sativa family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.34 (0.0629) R2 : 0.729
β1 : 8.12 (0.24) R2dD : 0.792 R2D : 0.404
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.86 (0.23) R2dE : 0.113 R2E : -0.204
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.59 (0.141) R2dN8 : 0.305 R2N8 : -0.021
σ : 1.16
deviance : 618.15
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.5
memory length : 1194
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
605.31 1.16 6.22 9 0.0869 -2.91 0.929 3.42 2.84 10.3 18.91 1239 -- --
616.56 1.16 6.35 8.06 0.124 -2.88 -0.871 -- 2.6 20 18.76 1134 -- --
608.62 1.15 6.23 8.99 0.0982 -2.88 -- 3.21 2.83 10.3 18.99 1255 -- --
617.92 1.16 6.34 8.11 0.0884 -2.86 -- -- 2.58 18.4 18.59 1152 -- --
609.04 1.15 6.23 8.97 -- -2.91 -- 3.13 2.82 -- 19.05 1231 -- --
812.02 1.34 6.47 7.12 0.483 -- 0.608 -- 1.97 13 -- -- -- --
813.45 1.34 6.47 7.14 0.487 -- -- -- 1.98 13.4 -- -- -- --
618.15 1.16 6.34 8.12 -- -2.86 -- -- 2.59 -- 18.5 1194 -- --
2131.52 2.15 6.68 -- 0.299 -0.786 -- -- 1.06 12.2 34.17 1466 -- --
828.06 1.34 6.48 7.12 -- -- -- -- 1.97 -- -- -- -- --
2158.61 2.17 6.65 -- 0.369 -- -- -- 1.18 12.7 -- -- -- --
2136.48 2.15 6.69 -- -- -0.853 -- -- 1.03 -- 34.17 1460 -- --
2167.15 2.17 6.66 -- -- -- -- -- 1.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 587.48 wind 9 43200 > th dose dependent rect. 20 10
3 589.06 wind 9 43200 > th dose independent rect. 20 10
7 590.24 wind 9 43200 > th dose independent rect. 20 5
8 590.35 wind 9 43200 < th dose independent rect. 20 11
13 591.64 wind 9 43200 > th dose dependent rect. 20 4
27 592.87 wind 9 43200 < th dose independent rect. 19 5
32 593.66 wind 9 43200 > th dose dependent rect. 17 14
44 595.16 wind 9 43200 > th dose independent rect. 17 15
50 596.39 wind 9 43200 < th dose independent rect. 17 15
60 598.99 wind 9 43200 < th dose independent sin 11 NA
61 599.01 wind 9 43200 > th dose independent sin 11 NA
63 599.43 wind 9 43200 > th dose dependent sin 13 NA
88 603.97 wind 7 43200 > th dose dependent sin 11 NA
95 605.05 temperature 20 720 > th dose dependent rect. 13 20
97 605.42 wind 7 43200 > th dose dependent rect. 17 19
99 605.55 wind 9 43200 > th dose independent rect. 17 19
109 606.09 temperature 20 1440 > th dose dependent rect. 7 18
129 606.80 wind 7 43200 > th dose dependent rect. 17 21
140 607.49 temperature 20 1440 > th dose dependent rect. 13 12
148 607.61 wind 9 43200 > th dose dependent rect. 17 7
155 607.73 temperature 20 1440 > th dose dependent sin 19 NA
173 608.01 humidity 80 14400 > th dose dependent rect. 21 2
225 608.98 temperature 20 720 > th dose dependent rect. 11 22
290 609.78 wind 9 43200 > th dose dependent rect. 14 18
350 610.49 wind 5 43200 > th dose dependent rect. 6 1
358 610.59 wind 5 43200 > th dose independent rect. 6 1
387 610.84 temperature 20 1440 > th dose dependent no NA NA
392 610.87 temperature 20 1440 > th dose dependent rect. 20 23
506 611.51 atmosphere 1000 43200 < th dose dependent rect. 11 1
534 611.68 wind 5 43200 > th dose independent rect. 15 20
652 612.30 wind 5 43200 < th dose independent rect. 15 20
875 613.47 wind 5 43200 < th dose independent rect. 6 1
907 613.64 wind 5 43200 > th dose dependent rect. 9 1
917 613.68 wind 9 43200 < th dose independent rect. 14 21
952 613.91 atmosphere 1000 43200 < th dose dependent rect. 9 6