Os07g0121600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1719, Oryza sativa family protein.
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Os07g0121600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1719, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 263.24 | 0.762 | 6.42 | 4.48 | 0.493 | -1.24 | -0.0615 | -1.97 | 1.42 | 22.7 | 19.6 | 12 | -- | -- |
| 266.42 | 0.76 | 6.39 | 4.83 | 0.49 | -1.3 | 0.398 | -- | 1.51 | 22.7 | 20.15 | 14 | -- | -- |
| 263.24 | 0.756 | 6.42 | 4.49 | 0.493 | -1.24 | -- | -1.93 | 1.42 | 22.7 | 19.6 | 13 | -- | -- |
| 267.03 | 0.761 | 6.38 | 4.82 | 0.484 | -1.34 | -- | -- | 1.52 | 22.6 | 20.11 | 14 | -- | -- |
| 275.92 | 0.774 | 6.4 | 4.59 | -- | -1.58 | -- | -1.81 | 1.48 | -- | 19 | 7 | -- | -- |
| 291.52 | 0.8 | 6.43 | 4.56 | 0.858 | -- | 0.75 | -- | 1.29 | 0.66 | -- | -- | -- | -- |
| 293.9 | 0.803 | 6.44 | 4.54 | 0.856 | -- | -- | -- | 1.29 | 0.567 | -- | -- | -- | -- |
| 279.32 | 0.778 | 6.36 | 4.88 | -- | -1.64 | -- | -- | 1.57 | -- | 19.69 | 7 | -- | -- |
| 830.02 | 1.34 | 6.6 | -- | 1.17 | 0.912 | -- | -- | 0.641 | 1.1 | 14.4 | 17 | -- | -- |
| 339.82 | 0.861 | 6.42 | 4.57 | -- | -- | -- | -- | 1.3 | -- | -- | -- | -- | -- |
| 836.01 | 1.35 | 6.55 | -- | 0.926 | -- | -- | -- | 0.784 | 0.807 | -- | -- | -- | -- |
| 872.29 | 1.38 | 6.52 | -- | -- | -0.848 | -- | -- | 0.854 | -- | 24.7 | 3 | -- | -- |
| 889.57 | 1.39 | 6.54 | -- | -- | -- | -- | -- | 0.797 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 244.82 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 2 | 245.09 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 3 | 245.11 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 6 | 245.14 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 6 |
| 11 | 245.33 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 12 | 245.48 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 13 | 245.50 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 46 | 245.61 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 65 | 245.81 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 89 | 246.12 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 219 | 249.48 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 225 | 249.69 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 227 | 249.72 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 229 | 249.76 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 248 | 250.18 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 18 |
| 254 | 250.27 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 5 |
| 268 | 250.54 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 314 | 251.11 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 320 | 251.19 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 17 |
| 328 | 251.22 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 332 | 251.23 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 19 | 18 |
| 407 | 251.65 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 427 | 251.76 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 21 |
| 451 | 251.86 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 455 | 251.87 | atmosphere | 1005.0 | 14400 | < th | dose independent | no | NA | NA |
| 475 | 251.99 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 582 | 252.45 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 11 |
| 654 | 252.71 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 663 | 252.74 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 664 | 252.74 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 728 | 253.01 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 5 |
| 735 | 253.08 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 8 | 21 |
| 794 | 253.33 | atmosphere | 1005.0 | 14400 | > th | dose independent | no | NA | NA |
| 799 | 253.34 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 813 | 253.38 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 814 | 253.38 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 860 | 253.52 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 882 | 253.61 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 909 | 253.71 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 8 |
| 913 | 253.73 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 914 | 253.73 | wind | 9.0 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 972 | 254.06 | wind | 7.0 | 4320 | > th | dose independent | rect. | 19 | 2 |