Os07g0122200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1719, Oryza sativa family protein.
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Os07g0122200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1719, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.06 | 0.576 | 9.09 | 2.28 | 1.22 | -1.2 | 0.294 | -0.671 | 1.27 | 19.7 | 20.4 | 11 | -- | -- |
| 150.37 | 0.571 | 9.08 | 2.4 | 1.22 | -1.25 | 0.336 | -- | 1.31 | 19.6 | 21 | 10 | -- | -- |
| 150.3 | 0.571 | 9.09 | 2.28 | 1.22 | -1.19 | -- | -0.67 | 1.27 | 19.7 | 20.4 | 11 | -- | -- |
| 150.65 | 0.572 | 9.08 | 2.39 | 1.22 | -1.23 | -- | -- | 1.3 | 19.7 | 20.98 | 7 | -- | -- |
| 228.62 | 0.708 | 9.07 | 2.23 | -- | -1.1 | -- | -0.743 | 1.23 | -- | 19.8 | 8 | -- | -- |
| 173.55 | 0.618 | 9.13 | 2.14 | 1.21 | -- | 0.277 | -- | 1.09 | 21.1 | -- | -- | -- | -- |
| 173.82 | 0.617 | 9.13 | 2.13 | 1.21 | -- | -- | -- | 1.09 | 21.1 | -- | -- | -- | -- |
| 229.06 | 0.705 | 9.05 | 2.35 | -- | -1.12 | -- | -- | 1.27 | -- | 20.2 | 4 | -- | -- |
| 289.29 | 0.796 | 9.17 | -- | 1.2 | -0.502 | -- | -- | 0.916 | 20.6 | 23.24 | 9 | -- | -- |
| 258.21 | 0.751 | 9.09 | 2.13 | -- | -- | -- | -- | 1.09 | -- | -- | -- | -- | -- |
| 293.37 | 0.801 | 9.18 | -- | 1.21 | -- | -- | -- | 0.855 | 21.3 | -- | -- | -- | -- |
| 368.54 | 0.897 | 9.13 | -- | -- | -0.634 | -- | -- | 0.936 | -- | 20.7 | 5 | -- | -- |
| 378.22 | 0.908 | 9.15 | -- | -- | -- | -- | -- | 0.849 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 137.15 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 13 |
| 3 | 137.23 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 8 | 137.61 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 9 | 137.65 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 12 | 137.81 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 23 | 138.02 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 41 | 138.33 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 80 | 138.75 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 95 | 139.01 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 99 | 139.01 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 172 | 139.75 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 175 | 139.82 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 178 | 139.97 | wind | 7.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 179 | 140.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 196 | 140.59 | wind | 5.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 198 | 140.66 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 11 | 7 |
| 202 | 140.84 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 9 | 9 |
| 208 | 141.05 | wind | 5.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 217 | 141.41 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 220 | 141.50 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 6 |
| 222 | 141.60 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 224 | 141.63 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 248 | 141.97 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 257 | 142.09 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 259 | 142.11 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 260 | 142.11 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 325 | 143.16 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 330 | 143.25 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 336 | 143.31 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 396 | 143.86 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 406 | 143.94 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 10 | 3 |
| 407 | 143.95 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 10 | 5 |
| 408 | 143.98 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 409 | 143.98 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 419 | 144.03 | wind | 9.0 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 503 | 144.47 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 575 | 144.79 | atmosphere | 1005.0 | 14400 | < th | dose dependent | sin | 23 | NA |
| 603 | 144.85 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 9 | 16 |
| 644 | 144.92 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 670 | 144.98 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 22 | 18 |
| 769 | 145.13 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 775 | 145.14 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 792 | 145.15 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 24 | 13 |
| 793 | 145.15 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 19 | 18 |
| 857 | 145.21 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 19 | 18 |
| 860 | 145.21 | atmosphere | 1005.0 | 14400 | < th | dose dependent | no | NA | NA |
| 920 | 145.26 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 929 | 145.27 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 12 | 23 |