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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0121100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1719, Oryza sativa family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.93 (0.0355) R2 : 0.035
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.304 (0.0747) R2dN8 : 0.0452 R2N8 : 0.035
σ : 0.669
deviance : 205.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
174.7 0.621 3.91 -0.649 0.00446 0.929 1.78 0.712 0.374 18.3 89.1 505 -- --
175.32 0.617 3.91 -0.598 0.016 0.925 -1.46 -- 0.381 6.13 89.53 487 -- --
180.07 0.625 3.91 -0.596 0.0553 0.845 -- -0.226 0.364 2.61 88.93 506 -- --
180.23 0.625 3.91 -0.606 0.0773 0.845 -- -- 0.375 2.45 88.73 540 -- --
180.14 0.625 3.91 -0.582 -- 0.875 -- -0.381 0.38 -- 88.97 487 -- --
188.1 0.643 3.93 -0.509 0.368 -- -1.13 -- 0.235 6.44 -- -- -- --
191.28 0.648 3.93 -0.524 0.363 -- -- -- 0.239 6.61 -- -- -- --
180.41 0.626 3.91 -0.608 -- 0.856 -- -- 0.375 -- 88.75 501 -- --
189.55 0.641 3.9 -- 0.116 0.782 -- -- 0.431 2.28 88.44 608 -- --
198.14 0.658 3.94 -0.515 -- -- -- -- 0.247 -- -- -- -- --
198.51 0.659 3.92 -- 0.356 -- -- -- 0.298 6.7 -- -- -- --
190.05 0.642 3.9 -- -- 0.791 -- -- 0.433 -- 88.91 506 -- --
205.14 0.669 3.93 -- -- -- -- -- 0.304 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 167.97 atmosphere 1010.0 30 < th dose independent rect. 8 21
3 170.54 wind 5.0 30 < th dose independent rect. 8 21
4 170.60 temperature 10.0 30 > th dose dependent rect. 8 21
5 170.77 atmosphere 1015.0 30 < th dose dependent rect. 8 21
6 170.90 wind 9.0 30 < th dose dependent rect. 8 21
8 171.20 atmosphere 1000.0 30 > th dose independent rect. 5 3
11 171.59 atmosphere 1010.0 30 < th dose independent rect. 5 3
18 172.13 wind 1.0 10 > th dose independent rect. 5 3
21 172.36 precipitation 0.1 30 < th dose independent rect. 8 21
22 172.36 precipitation 0.1 30 < th dose dependent rect. 8 21
23 172.37 atmosphere 1000.0 30 > th dose independent rect. 5 23
26 172.46 humidity 50.0 10 > th dose independent rect. 8 21
31 172.70 wind 7.0 30 < th dose independent rect. 5 3
33 172.74 temperature 10.0 30 > th dose independent rect. 5 3
35 172.74 temperature 30.0 30 < th dose independent rect. 5 3
36 172.74 humidity 50.0 30 > th dose independent rect. 5 3
40 172.74 temperature 10.0 30 > th dose independent rect. 8 21
41 172.75 precipitation 0.1 30 < th dose independent rect. 5 3
42 172.75 precipitation 0.1 30 < th dose dependent rect. 5 3
43 172.79 humidity 90.0 720 < th dose independent rect. 17 19
44 172.79 atmosphere 1015.0 30 < th dose dependent rect. 5 3
45 172.83 atmosphere 995.0 30 > th dose independent rect. 8 21
47 172.90 radiation 40.0 30 < th dose independent rect. 5 3
48 173.02 wind 9.0 1440 < th dose independent rect. 6 3
49 173.02 temperature 10.0 1440 > th dose independent rect. 6 3
52 173.02 humidity 50.0 1440 > th dose independent rect. 6 3
54 173.02 atmosphere 995.0 1440 > th dose independent rect. 6 3
55 173.02 atmosphere 1015.0 1440 < th dose independent rect. 6 3
57 173.02 temperature 10.0 1440 > th dose independent rect. 9 21
60 173.02 precipitation 0.1 720 < th dose independent rect. 6 23
61 173.02 precipitation 0.1 720 < th dose dependent rect. 6 23
71 173.37 wind 9.0 30 < th dose dependent rect. 5 3
73 173.40 wind 5.0 30 < th dose independent rect. 16 13
74 173.45 humidity 50.0 30 > th dose dependent rect. 5 3
75 173.55 temperature 30.0 30 < th dose dependent rect. 5 3
79 173.60 radiation 40.0 30 < th dose dependent rect. 5 3
89 173.80 atmosphere 1000.0 30 > th dose independent rect. 5 21
108 173.94 humidity 90.0 720 > th dose dependent rect. 4 20
111 174.00 atmosphere 1000.0 30 > th dose independent rect. 5 14
121 174.17 humidity 80.0 90 > th dose dependent rect. 5 6
125 174.23 wind 5.0 30 < th dose independent rect. 19 10
127 174.23 humidity 50.0 720 > th dose dependent rect. 19 13
138 174.50 precipitation 0.1 720 < th dose independent rect. 17 18
139 174.50 precipitation 0.1 720 < th dose dependent rect. 17 18
151 174.68 humidity 50.0 720 > th dose dependent rect. 16 16
153 174.71 wind 5.0 30 < th dose independent rect. 11 18
158 174.80 humidity 90.0 720 > th dose independent rect. 4 21
163 174.85 humidity 80.0 90 > th dose independent rect. 5 6
164 174.85 wind 1.0 30 > th dose independent rect. 8 21
165 174.85 temperature 10.0 30 > th dose dependent rect. 5 3
172 174.93 atmosphere 995.0 30 > th dose dependent rect. 5 3
177 174.98 atmosphere 1010.0 30 < th dose independent rect. 11 18
179 175.00 precipitation 0.1 720 < th dose independent rect. 15 14
181 175.00 precipitation 0.1 720 < th dose dependent rect. 15 14
185 175.04 atmosphere 1000.0 720 > th dose independent rect. 18 14
186 175.04 humidity 80.0 90 > th dose dependent rect. 5 8
189 175.06 humidity 50.0 720 > th dose dependent sin 12 NA
225 175.31 precipitation 0.1 720 > th dose independent rect. 20 22
242 175.37 wind 7.0 720 < th dose independent rect. 17 1
267 175.48 humidity 70.0 30 > th dose dependent rect. 5 21
291 175.55 humidity 80.0 90 > th dose independent rect. 5 8
323 175.66 wind 9.0 30 < th dose dependent rect. 17 12
333 175.72 radiation 40.0 4320 < th dose dependent rect. 1 4
338 175.74 temperature 30.0 30 < th dose dependent rect. 5 14
348 175.78 humidity 90.0 270 > th dose dependent rect. 4 15
352 175.80 humidity 50.0 1440 > th dose dependent sin 14 NA
355 175.81 radiation 40.0 90 < th dose independent rect. 8 21
384 175.91 humidity 70.0 30 > th dose dependent rect. 5 15
402 175.96 wind 9.0 30 < th dose dependent rect. 19 10
407 175.97 humidity 90.0 1440 < th dose dependent rect. 15 15
414 175.99 atmosphere 995.0 720 > th dose independent rect. 18 23
434 176.03 atmosphere 995.0 30 > th dose dependent rect. 5 14
444 176.05 temperature 30.0 30 < th dose independent rect. 5 14
452 176.07 humidity 90.0 720 < th dose independent rect. 22 21
465 176.12 atmosphere 1000.0 720 > th dose independent rect. 20 10
472 176.14 humidity 80.0 1440 > th dose independent rect. 13 19
485 176.16 atmosphere 995.0 30 > th dose dependent rect. 5 21
486 176.17 humidity 90.0 720 < th dose independent sin 10 NA
489 176.18 humidity 80.0 1440 > th dose independent rect. 13 16
494 176.19 temperature 25.0 4320 > th dose independent rect. 5 1
531 176.26 radiation 40.0 4320 < th dose dependent rect. 20 9
536 176.27 atmosphere 1015.0 30 < th dose independent rect. 19 10
542 176.28 humidity 80.0 1440 > th dose independent rect. 9 21
546 176.29 humidity 70.0 14400 > th dose independent rect. 19 13
559 176.30 humidity 90.0 720 < th dose dependent rect. 17 18
573 176.32 wind 7.0 30 < th dose dependent rect. 11 18
580 176.33 humidity 90.0 1440 < th dose dependent sin 13 NA
598 176.36 atmosphere 1000.0 270 > th dose independent rect. 5 1
609 176.37 humidity 90.0 270 > th dose dependent sin 1 NA
618 176.38 atmosphere 1000.0 270 > th dose independent rect. 1 23
641 176.42 humidity 90.0 270 > th dose independent rect. 3 11
661 176.45 humidity 70.0 14400 > th dose independent rect. 17 4
672 176.46 humidity 90.0 270 > th dose independent rect. 3 8
674 176.46 humidity 70.0 14400 > th dose independent rect. 17 10
680 176.46 wind 9.0 14400 > th dose dependent rect. 15 2
690 176.47 humidity 80.0 1440 > th dose independent rect. 23 22
693 176.49 humidity 70.0 14400 > th dose independent rect. 18 2
701 176.50 humidity 90.0 720 > th dose independent sin 13 NA
702 176.50 precipitation 0.1 30 < th dose independent rect. 19 10
706 176.50 precipitation 0.1 30 < th dose dependent rect. 19 10
717 176.52 humidity 80.0 1440 > th dose independent sin 16 NA
738 176.54 humidity 80.0 1440 > th dose independent rect. 19 23
745 176.55 humidity 90.0 270 > th dose independent sin 4 NA
746 176.55 wind 1.0 10 > th dose independent rect. 5 14
753 176.56 humidity 90.0 720 > th dose independent rect. 16 22
767 176.58 humidity 90.0 720 > th dose dependent sin 14 NA
779 176.59 humidity 80.0 90 > th dose independent rect. 5 14
856 176.67 atmosphere 1000.0 30 > th dose independent rect. 5 19
865 176.68 humidity 70.0 14400 < th dose independent rect. 17 3
879 176.69 humidity 70.0 14400 < th dose dependent rect. 16 1
900 176.71 humidity 70.0 14400 < th dose independent rect. 17 14
901 176.71 humidity 90.0 270 > th dose independent rect. 3 15
929 176.73 humidity 90.0 720 < th dose dependent sin 10 NA
933 176.74 humidity 80.0 1440 > th dose independent no NA NA
936 176.74 atmosphere 1015.0 30 < th dose dependent rect. 11 18
963 176.76 temperature 10.0 30 > th dose independent rect. 19 10
964 176.76 temperature 30.0 30 < th dose independent rect. 19 10
965 176.76 humidity 50.0 30 > th dose independent rect. 19 10
967 176.76 atmosphere 995.0 30 > th dose independent rect. 19 10
968 176.76 radiation 1.0 30 < th dose independent rect. 19 10
975 176.76 temperature 10.0 30 > th dose independent rect. 5 14
977 176.76 atmosphere 1015.0 30 < th dose independent rect. 5 14
995 176.77 humidity 80.0 14400 < th dose dependent rect. 16 8
996 176.77 radiation 30.0 30 < th dose dependent rect. 19 10