BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0241200 Os11g0241200|AK111322
(178 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0241200 Protein of unknown function DUF538 family protein 268 1e-72
Os12g0198000 Protein of unknown function DUF538 family protein 142 1e-34
Os05g0421100 Protein of unknown function DUF538 family protein 115 1e-26
Os05g0362500 Virulence factor, pectin lyase fold family pro... 111 3e-25
Os11g0241700 Protein of unknown function DUF538 family protein 109 1e-24
Os05g0362300 Protein of unknown function DUF538 family protein 107 6e-24
Os11g0241832 91 3e-19
Os03g0393600 87 7e-18
Os04g0443200 Protein of unknown function DUF538 family protein 86 1e-17
Os03g0393500 65 3e-11
>Os11g0241200 Protein of unknown function DUF538 family protein
Length = 178
Score = 268 bits (686), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 38 TPTAYEMVERYGFPRGILPEGVESYVLRPDGSFEVRLSGDGNGGGDCEFRVGDGGAYLLR 97
TPTAYEMVERYGFPRGILPEGVESYVLRPDGSFEVRLSGDGNGGGDCEFRVGDGGAYLLR
Sbjct: 38 TPTAYEMVERYGFPRGILPEGVESYVLRPDGSFEVRLSGDGNGGGDCEFRVGDGGAYLLR 97
Query: 98 YGRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPLANFADC 157
YGRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPLANFADC
Sbjct: 98 YGRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPLANFADC 157
Query: 158 PRCRCGFDCDT 168
PRCRCGFDCDT
Sbjct: 158 PRCRCGFDCDT 168
>Os12g0198000 Protein of unknown function DUF538 family protein
Length = 167
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/128 (57%), Positives = 90/128 (70%), Gaps = 9/128 (7%)
Query: 38 TPTAYEMVERYGFPRGILPEGVESYVLRPDGSFEVRLSGDGNGGGDCEFRVGDGGAYLLR 97
TPTAYEM+ERY FPRGILP GVE Y LR DGSFEV D CEF + +L+R
Sbjct: 36 TPTAYEMLERYDFPRGILPVGVEGYELREDGSFEVYFPRD------CEFMLAR--TWLVR 87
Query: 98 YGRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPLANFADC 157
YG R+AG A G + SL+GV VKVLF WL +G VDR+GD L F++GP+S +FPL++FA
Sbjct: 88 YGARIAGAAASGRLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAHS 147
Query: 158 PRCRCGFD 165
P CR G+D
Sbjct: 148 PHCR-GYD 154
>Os05g0421100 Protein of unknown function DUF538 family protein
Length = 190
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 81/126 (64%), Gaps = 9/126 (7%)
Query: 39 PTAYEMVERYGFPRGILPEGVESYVLRP-DGSFEVRLSGDGNGGGDCEFRVGDGGAYLLR 97
P+AYEM+ER+GFPRGILPEGV Y LRP DG F V L G G+CEF V DGG Y L
Sbjct: 58 PSAYEMLERFGFPRGILPEGVTGYTLRPSDGEFAVYL-----GTGECEFEV-DGG-YRLT 110
Query: 98 YGRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRA-GDDLRFFVGPLSAAFPLANFAD 156
Y R+ G GSI L GV+V+V GI RV A D L F+VGPLS AFP+ F +
Sbjct: 111 YQGRITGRVAGGSITGLRGVTVRVFMMNWGIDRVVVADADHLVFYVGPLSQAFPVDGFEE 170
Query: 157 CPRCRC 162
P+CRC
Sbjct: 171 SPQCRC 176
>Os05g0362500 Virulence factor, pectin lyase fold family protein
Length = 182
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 77/133 (57%), Gaps = 6/133 (4%)
Query: 39 PTAYEMVERYGFPRGILPEGVESYVLR-PDGSFEVRLSG---DGNGGGDCEFRVGDGGAY 94
PTAYE++E Y FP GILP+GV SY L G F L D + CEF + G+Y
Sbjct: 27 PTAYEVLESYDFPVGILPKGVTSYTLEATTGDFTATLDTGDDDDSSSSTCEFAIE--GSY 84
Query: 95 LLRYGRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPLANF 154
LRY R + G G + L GV+VKVLF WL I V R GD L F VG SA F + NF
Sbjct: 85 SLRYQRAITGRIATGHLTDLRGVAVKVLFFWLNIVEVTRRGDRLEFSVGIASADFTVDNF 144
Query: 155 ADCPRCRCGFDCD 167
+ P+C CGFDCD
Sbjct: 145 LESPQCGCGFDCD 157
>Os11g0241700 Protein of unknown function DUF538 family protein
Length = 153
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
Query: 39 PTAYEMVERYGFPRGILPEGVESYVLRPDGS-FEVRLSGDGNGGGDCEFRVGDGGAYLLR 97
PTAY+M++R+GFP GILP+GV+ Y L DGS FEV L+GD CEFR Y+L
Sbjct: 38 PTAYDMLQRFGFPVGILPQGVQGYKLGDDGSSFEVYLAGD------CEFRAAKK--YVLH 89
Query: 98 YGRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPLANFADC 157
Y RVAG GSI SLEGV VK FAW I VD GD ++ VG +A A
Sbjct: 90 YSSRVAGQIAAGSITSLEGVKVKEAFAWFRISEVDVDGDQIKLHVGLYTATVAADQLAVS 149
Query: 158 PRCR 161
P+C
Sbjct: 150 PQCN 153
>Os05g0362300 Protein of unknown function DUF538 family protein
Length = 173
Score = 107 bits (266), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 76/129 (58%), Gaps = 7/129 (5%)
Query: 39 PTAYEMVERYGFPRGILPEGVESYVLR-PDGSFEVRLSGDGNGGGDCEFRVGDGGAYLLR 97
PTAYE + + FP GILP+GV SY L G F L N C F + G+Y LR
Sbjct: 28 PTAYEALATFDFPPGILPKGVVSYTLDDATGDFTATL----NTTSTCAFSIQ--GSYSLR 81
Query: 98 YGRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPLANFADC 157
Y RR++G + +L+GVSVK+LF W+ I V R GD+L F VG SA F + NF +
Sbjct: 82 YQRRLSGRIAADRLTNLQGVSVKILFLWVNIVEVTRHGDELGFSVGIASADFGIDNFLES 141
Query: 158 PRCRCGFDC 166
P+C CGFDC
Sbjct: 142 PQCGCGFDC 150
>Os11g0241832
Length = 184
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 66/124 (53%), Gaps = 10/124 (8%)
Query: 39 PTAYEMVERYGFPRGILPEGVESYVLRP-DGSFEVRLSGDGNGGGDCEFRVGDGGAYLLR 97
PT YEM+ +YGFP GILP G + Y L DGSF+V L GD C V D Y LR
Sbjct: 70 PTVYEMLGKYGFPPGILPAGAQGYTLDAGDGSFQVTLPGD------C---VVDVQGYKLR 120
Query: 98 YGRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPLANFADC 157
Y + G GSI L+GVSVK+ W+GI V+ G D+ F +S + P F
Sbjct: 121 YRSNIYGNVRAGSIDGLDGVSVKIAIVWVGIHDVEADGGDVTFHASAISKSSPADGFQTS 180
Query: 158 PRCR 161
P C+
Sbjct: 181 PSCQ 184
>Os03g0393600
Length = 128
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 17/122 (13%)
Query: 40 TAYEMVERYGFPRGILPEGVESYVLRPDGSFEVRLSGDGNGGGDCEFRVGDGGA-YLLRY 98
T Y+++++ PRG++P+GV SYVL PDG EV L +C F V GG+ Y R+
Sbjct: 22 TVYDVLQQNNLPRGLIPQGVTSYVLHPDGHLEVTLP------SECNFAVTVGGSPYKFRF 75
Query: 99 GRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPLANFADCP 158
+ G+ GSI + GV V+ VD AG+ L F VG S +FP+++F P
Sbjct: 76 DSKFVGLIKSGSISEINGVRVQ----------VDHAGNQLTFKVGTSSISFPISDFTSSP 125
Query: 159 RC 160
C
Sbjct: 126 VC 127
>Os04g0443200 Protein of unknown function DUF538 family protein
Length = 165
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
Query: 39 PTAYEMVERYGFPRGILPEGVESYVLRPDGSFEVRLSGDGNGGGDCEFRVGDGGAYLLRY 98
PT E+++R+G PR +LP Y+L DGSF++ L G C V + G Y + Y
Sbjct: 40 PTVPELMDRFGLPRALLPVTARRYLLHDDGSFQLFLDGG------C---VAEAGGYRVGY 90
Query: 99 GRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPLANFADCP 158
G +++G G L GV V+VLFAW+ + V+ AG ++ +GP+ +FP A F P
Sbjct: 91 GVKLSGAVAPGRATGLGGVRVRVLFAWVPVTAVEVAGGEVTVSLGPIKKSFPAAGFKSSP 150
Query: 159 RCRCG 163
RC G
Sbjct: 151 RCIAG 155
>Os03g0393500
Length = 96
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 40 TAYEMVERYGFPRGILPEGVESYVLRPDGSFEVRLSGDGNGGGDCEFRVGDGGA-YLLRY 98
T Y+++++ PRG++P+GV SYVL PDG EV L G+C F + GG+ Y R+
Sbjct: 22 TVYDVLQQNNLPRGLIPQGVTSYVLHPDGHLEVTLP------GECNFAITVGGSPYKFRF 75
Query: 99 GRRVAGVAMEGSIRSLEGVSV 119
+ G+ GSI ++GV V
Sbjct: 76 DSKFVGLIKSGSISEIKGVRV 96
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.145 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,758,021
Number of extensions: 286507
Number of successful extensions: 1180
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1173
Number of HSP's successfully gapped: 11
Length of query: 178
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 84
Effective length of database: 12,127,685
Effective search space: 1018725540
Effective search space used: 1018725540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)