BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0198100 Os11g0198100|AK070130
(247 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0198100 Protein of unknown function DUF616 family protein 515 e-146
Os05g0531500 Protein of unknown function DUF616 family protein 220 9e-58
Os06g0724300 Protein of unknown function DUF616 family protein 198 2e-51
Os01g0749100 Protein of unknown function DUF616 family protein 151 4e-37
Os02g0745800 Protein of unknown function DUF616 family protein 145 3e-35
Os01g0210400 Protein of unknown function DUF616 family protein 137 9e-33
Os01g0304300 Protein of unknown function DUF616 family protein 82 5e-16
>Os11g0198100 Protein of unknown function DUF616 family protein
Length = 247
Score = 515 bits (1326), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/247 (100%), Positives = 247/247 (100%)
Query: 1 YLSTQITSLSKKTVCFAMFLDEITLRTLESEGQKMDSSGFIGIWKIILIKNMPYNDMRRV 60
YLSTQITSLSKKTVCFAMFLDEITLRTLESEGQKMDSSGFIGIWKIILIKNMPYNDMRRV
Sbjct: 1 YLSTQITSLSKKTVCFAMFLDEITLRTLESEGQKMDSSGFIGIWKIILIKNMPYNDMRRV 60
Query: 61 GKIPKFLAHRLFPSSRFSIWLDSKLRLQNDPILILEYFLWRHGYEYAISNHYDRHCVWEE 120
GKIPKFLAHRLFPSSRFSIWLDSKLRLQNDPILILEYFLWRHGYEYAISNHYDRHCVWEE
Sbjct: 61 GKIPKFLAHRLFPSSRFSIWLDSKLRLQNDPILILEYFLWRHGYEYAISNHYDRHCVWEE 120
Query: 121 VAQNKRLNKFNHTIIDQQFEFYQADGLTKFNPSDPNKLLPSYVPEGSFIVREHTPMSNLF 180
VAQNKRLNKFNHTIIDQQFEFYQADGLTKFNPSDPNKLLPSYVPEGSFIVREHTPMSNLF
Sbjct: 121 VAQNKRLNKFNHTIIDQQFEFYQADGLTKFNPSDPNKLLPSYVPEGSFIVREHTPMSNLF 180
Query: 181 SCLWFNEVDRFTPRDQLSFAYTYLKLRRMNPEKPFRLNMFKDCERRSIAKLFHHRSEERR 240
SCLWFNEVDRFTPRDQLSFAYTYLKLRRMNPEKPFRLNMFKDCERRSIAKLFHHRSEERR
Sbjct: 181 SCLWFNEVDRFTPRDQLSFAYTYLKLRRMNPEKPFRLNMFKDCERRSIAKLFHHRSEERR 240
Query: 241 SSPQLTR 247
SSPQLTR
Sbjct: 241 SSPQLTR 247
>Os05g0531500 Protein of unknown function DUF616 family protein
Length = 575
Score = 220 bits (560), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 113/235 (48%), Positives = 151/235 (64%), Gaps = 18/235 (7%)
Query: 7 TSLSKKTVCFAMFLDEITLRTLESEGQKMDSSGF-----IGIWKIILIKNMPYNDMRRVG 61
+ SK CF MF+DE E+E +SS +G+W++++++N+PY D RR G
Sbjct: 282 SEFSKANACFYMFVDE------ETEAYVKNSSSLYRNNKVGLWRLVVVRNLPYEDPRRTG 335
Query: 62 KIPKFLAHRLFPSSRFSIWLDSKLRLQNDPILILEYFLWRHGYEYAISNHYDRHCVWEEV 121
KIPK L HRLFP+ RFS+W+D+KL+L DP L+LE FLWR +AIS HY R V+EE
Sbjct: 336 KIPKLLLHRLFPNVRFSVWIDAKLKLVVDPYLLLERFLWRKNATFAISRHYKRFDVFEEA 395
Query: 122 AQNKRLNKFNHTIIDQQFEFYQADGLTKFNPSDPNKL-LPSYVPEGSFIVREHTPMSNLF 180
NK K+++ ID Q EFY+ +GLT + P+ KL + S VPEG I+REH P++NLF
Sbjct: 396 EANKAAGKYDNASIDYQIEFYRNEGLTYYTPA---KLPITSDVPEGCVIIREHIPITNLF 452
Query: 181 SCLWFNEVDRFTPRDQLSFAYTYLKLRRMNPEKPFRLNMFKDCERRSIAKLFHHR 235
+CLWFNEVDRFT RDQ+SF+ K+R P MF DCERR+ +HR
Sbjct: 453 TCLWFNEVDRFTSRDQISFSTVRDKIRARVGWMP---EMFLDCERRNFVIQGYHR 504
>Os06g0724300 Protein of unknown function DUF616 family protein
Length = 468
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 147/237 (62%), Gaps = 11/237 (4%)
Query: 4 TQITSLSKKTVCFAMFLDEITLRTLESEGQ-KMDSSG--FIGIWKIILIKNMPYNDMRRV 60
+ I+ S+K CF M +DE++L +E K D +G ++GIW++I + +P+++ RR
Sbjct: 189 SNISIRSQKLFCFLMVVDEVSLDFIEKNTTVKFDKAGGKWVGIWRLITLHRLPFDEPRRN 248
Query: 61 GKIPKFLAHRLFPSSRFSIWLDSKLRLQNDPILILEYFLWRHGYEYAISNHYDRHCVWEE 120
GK+PK L HRLFP + +SIW+D K+ L DP+LILE +LWR Y +A++ H ++EE
Sbjct: 249 GKVPKILTHRLFPQAWYSIWIDGKMELIVDPLLILERYLWRGKYTFAVAVHKHHKSIYEE 308
Query: 121 VAQNKRLNKFNHTIIDQQFEFYQADGLTKFNPSDPNKLLPSYVPEGSFIVREHTPMSNLF 180
KR ++ ++D Q + Y +G+ P +P K +PS VPEG+ ++REHT MS+LF
Sbjct: 309 GDAIKRRKRYARPLVDLQMKMYYHEGM---EPWNPKKRMPSDVPEGAVLIREHTTMSDLF 365
Query: 181 SCLWFNEVDRFTPRDQLSFAYTYLKLRRMNPEKPFRLNMFKDCERRSIAKLFHHRSE 237
SCLWFNEV+ FTPRDQLSF Y +L + MF +CE S+ L H E
Sbjct: 366 SCLWFNEVNLFTPRDQLSFGYVVYRL-----GDALKFFMFPNCEYNSLFILHRHTRE 417
>Os01g0749100 Protein of unknown function DUF616 family protein
Length = 203
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 115/208 (55%), Gaps = 13/208 (6%)
Query: 40 FIGIWKIILIKNMPYNDMRRVGKIPKFLAHRLFPSSRFSIWLDSKLRLQNDPILILEYFL 99
IG W+II+++++P+ D R GKIPK L HRLFP +R+SIW+DSK + + DPI +LE L
Sbjct: 1 MIGRWRIIVVRSLPFVDQRLNGKIPKMLTHRLFPEARYSIWVDSKYQFRRDPIGVLEALL 60
Query: 100 WRHGYEYAISNHYDRHCVWEEVAQNKRLNKFNHTIIDQQFEFYQADGLTKFNPSDPNKLL 159
WR +AIS H R +++E + +K ++ Q Y+ DG+ P +
Sbjct: 61 WRTNSTFAISEHGARSNIYDEGKAIVQKHKATPEEVEVQLTQYRKDGM----PDEKRLHG 116
Query: 160 PSYVPEGSFIVREHTPMSNLFSCLWFNEVDRFTPRDQLSFAYTYLKLRRMNPEKPFRLNM 219
+ E S IVRE P++N F C WFNEV RFT RDQLSF Y +L +NM
Sbjct: 117 LKALSEASVIVRELAPVTNHFMCAWFNEVVRFTSRDQLSFPYVLWRLNMPG------INM 170
Query: 220 FKDCERRSIAKLFHHRSEERRSSPQLTR 247
F C RR + H R+ P LT+
Sbjct: 171 FTVCTRRDLVNSLGH---TRKVKPLLTQ 195
>Os02g0745800 Protein of unknown function DUF616 family protein
Length = 104
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 80/106 (75%), Gaps = 8/106 (7%)
Query: 138 QFEFYQADGLTKFNPSDPNKLLPSYVPEGSFIVREHTPMSNLFSCLWFNEVDRFTPRDQL 197
Q+E++ + L N +D VPEGSFIVR HTPMSNLFSCLWFNEV+RFT RDQL
Sbjct: 3 QYEYFFSIDLLHHNCAD--------VPEGSFIVRAHTPMSNLFSCLWFNEVNRFTSRDQL 54
Query: 198 SFAYTYLKLRRMNPEKPFRLNMFKDCERRSIAKLFHHRSEERRSSP 243
SFAYTYLKLRRMN KPF LNMFKDCERR+I KLFHHR+ E P
Sbjct: 55 SFAYTYLKLRRMNTGKPFHLNMFKDCERRAITKLFHHRANETADPP 100
>Os01g0210400 Protein of unknown function DUF616 family protein
Length = 499
Score = 137 bits (344), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 120/209 (57%), Gaps = 15/209 (7%)
Query: 6 ITSLSKKTVCFAMFLDEITLRTLESE---GQKMDSSGFIGIWKIILI-------KNMPYN 55
+ S + +TVCF MF+D+ T R L S + +G IG W++ + +PY
Sbjct: 225 LGSETLRTVCFFMFIDDATHRVLASHNILAGERGEAGTIGAWRVARLVAGAGGDHRLPYE 284
Query: 56 DMRRVGKIPKFLAHRLFPSSRFSIWLDSKLRLQNDPILILEYFLWRHGYEYAISNH-YDR 114
+ I K+L HRLFP++RFS+W+D+K++L DP+L++ F+ G + A+S H ++
Sbjct: 285 NPAMNCVIVKYLLHRLFPNARFSVWVDAKMQLTVDPLLLVHSFVAGKGADMAVSKHPFNL 344
Query: 115 HCVWEEVAQNKRLNKFNHTIIDQQFEFYQADGLTKFNPSDPNKL-LPSYVPEGSFIVREH 173
H + E +A + + I +Q E Y +GL P P KL PS VP+ + I+R H
Sbjct: 345 HTMEEAIATARWRKWGDVDSIREQMETYCRNGL---QPWSPIKLPYPSDVPDTAIIIRRH 401
Query: 174 TPMSNLFSCLWFNEVDRFTPRDQLSFAYT 202
S+LFSCL FNE++ F PRDQL+FAY
Sbjct: 402 GLASDLFSCLLFNELEAFNPRDQLAFAYV 430
>Os01g0304300 Protein of unknown function DUF616 family protein
Length = 90
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 49/65 (75%), Gaps = 5/65 (7%)
Query: 163 VPEGSFIVREHTPMSNLFSCLWFNEVDRFTPRDQLSFAYTYLKLR-RMNPEKPFRLNMFK 221
VPEG I+REH P++NLF+CLWFNEVDRFT RDQLSF+ K+R R+N + +MF
Sbjct: 19 VPEGCVIIREHIPITNLFTCLWFNEVDRFTSRDQLSFSTVRDKIRKRVN----WTADMFL 74
Query: 222 DCERR 226
DCERR
Sbjct: 75 DCERR 79
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.139 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,351,546
Number of extensions: 343972
Number of successful extensions: 749
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 740
Number of HSP's successfully gapped: 7
Length of query: 247
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 149
Effective length of database: 11,918,829
Effective search space: 1775905521
Effective search space used: 1775905521
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)