Os05g0531500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF616 family protein.
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Os05g0531500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF616 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.76 | 0.501 | 7.8 | -0.59 | 0.578 | -0.491 | -0.873 | 0.725 | -0.57 | 11.5 | 70.07 | 36 | -- | -- |
| 114.7 | 0.499 | 7.79 | -0.56 | 0.571 | -0.505 | -1.26 | -- | -0.558 | 11.2 | 71.06 | 54 | -- | -- |
| 115.86 | 0.501 | 7.8 | -0.633 | 0.593 | -0.483 | -- | 1.25 | -0.568 | 11.7 | 70.47 | 52 | -- | -- |
| 121.81 | 0.514 | 7.8 | -0.598 | 0.578 | -0.5 | -- | -- | -0.566 | 11.4 | 71.11 | 54 | -- | -- |
| 131.45 | 0.534 | 7.82 | -0.697 | -- | -0.72 | -- | 1.15 | -0.567 | -- | 72 | 53 | -- | -- |
| 126.89 | 0.528 | 7.79 | -0.51 | 0.901 | -- | -1.23 | -- | -0.555 | 12.5 | -- | -- | -- | -- |
| 133.25 | 0.541 | 7.79 | -0.556 | 0.906 | -- | -- | -- | -0.561 | 12.7 | -- | -- | -- | -- |
| 132.05 | 0.538 | 7.81 | -0.65 | -- | -0.689 | -- | -- | -0.559 | -- | 77.81 | 21 | -- | -- |
| 131.23 | 0.534 | 7.78 | -- | 0.602 | -0.469 | -- | -- | -0.499 | 11.5 | 72 | 54 | -- | -- |
| 184.65 | 0.635 | 7.81 | -0.588 | -- | -- | -- | -- | -0.577 | -- | -- | -- | -- | -- |
| 141.39 | 0.556 | 7.78 | -- | 0.915 | -- | -- | -- | -0.499 | 12.7 | -- | -- | -- | -- |
| 142.8 | 0.557 | 7.79 | -- | -- | -0.684 | -- | -- | -0.488 | -- | 77 | 6 | -- | -- |
| 193.78 | 0.65 | 7.8 | -- | -- | -- | -- | -- | -0.511 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 110.87 | humidity | 70 | 30 | > th | dose independent | rect. | 9 | 23 |
| 4 | 112.34 | humidity | 70 | 90 | > th | dose independent | rect. | 11 | 8 |
| 8 | 112.55 | humidity | 70 | 30 | < th | dose independent | rect. | 10 | 23 |
| 9 | 112.56 | humidity | 70 | 30 | > th | dose independent | sin | 19 | NA |
| 14 | 112.85 | humidity | 70 | 30 | > th | dose independent | rect. | 5 | 14 |
| 17 | 113.07 | humidity | 70 | 90 | > th | dose independent | rect. | 11 | 12 |
| 19 | 113.22 | humidity | 70 | 30 | < th | dose independent | sin | 19 | NA |
| 27 | 113.46 | humidity | 70 | 30 | < th | dose independent | rect. | 10 | 10 |
| 41 | 113.49 | humidity | 70 | 10 | > th | dose independent | rect. | 17 | 23 |
| 47 | 113.69 | temperature | 10 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 49 | 113.73 | wind | 9 | 10 | < th | dose independent | rect. | 19 | 23 |
| 55 | 113.79 | humidity | 70 | 30 | > th | dose independent | rect. | 13 | 23 |
| 57 | 113.83 | humidity | 70 | 30 | > th | dose independent | no | NA | NA |
| 63 | 113.87 | humidity | 70 | 30 | > th | dose independent | rect. | 15 | 23 |
| 66 | 113.90 | humidity | 70 | 30 | > th | dose independent | rect. | 5 | 18 |
| 70 | 113.97 | humidity | 70 | 30 | > th | dose independent | rect. | 22 | 23 |
| 80 | 114.11 | humidity | 70 | 30 | < th | dose independent | no | NA | NA |
| 81 | 114.11 | humidity | 70 | 30 | < th | dose independent | rect. | 7 | 13 |
| 159 | 114.27 | temperature | 25 | 30 | > th | dose dependent | rect. | 18 | 14 |
| 166 | 114.38 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 5 |
| 167 | 114.39 | humidity | 70 | 30 | > th | dose independent | rect. | 1 | 23 |
| 168 | 114.43 | humidity | 70 | 30 | > th | dose independent | rect. | 3 | 23 |
| 170 | 114.45 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 18 |
| 173 | 114.54 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 183 | 114.63 | radiation | 20 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 200 | 114.67 | radiation | 10 | 90 | > th | dose independent | no | NA | NA |
| 201 | 114.67 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 12 |
| 281 | 114.69 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 18 |
| 295 | 114.76 | humidity | 70 | 30 | > th | dose independent | rect. | 5 | 23 |
| 380 | 114.93 | wind | 5 | 30 | > th | dose independent | rect. | 18 | 1 |
| 418 | 115.04 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 20 |
| 459 | 115.25 | humidity | 70 | 30 | < th | dose independent | rect. | 13 | 23 |
| 468 | 115.31 | temperature | 10 | 10 | > th | dose dependent | rect. | 7 | 10 |
| 471 | 115.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 1 |
| 472 | 115.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 20 |
| 475 | 115.34 | humidity | 70 | 90 | > th | dose independent | rect. | 17 | 14 |
| 486 | 115.39 | humidity | 70 | 90 | > th | dose independent | rect. | 13 | 18 |
| 490 | 115.42 | wind | 3 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 494 | 115.44 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 18 | 1 |
| 508 | 115.45 | humidity | 90 | 30 | < th | dose dependent | rect. | 7 | 15 |
| 509 | 115.45 | radiation | 20 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 618 | 115.59 | humidity | 70 | 10 | < th | dose independent | rect. | 17 | 23 |
| 621 | 115.60 | radiation | 10 | 90 | > th | dose independent | rect. | 12 | 23 |
| 690 | 115.78 | atmosphere | 995 | 10 | > th | dose independent | rect. | 19 | 23 |
| 700 | 115.80 | humidity | 70 | 30 | < th | dose independent | rect. | 15 | 23 |
| 708 | 115.84 | humidity | 60 | 30 | > th | dose dependent | rect. | 5 | 14 |
| 746 | 115.94 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 747 | 115.94 | humidity | 90 | 30 | < th | dose dependent | rect. | 7 | 18 |
| 751 | 115.96 | humidity | 80 | 30 | < th | dose dependent | rect. | 18 | 1 |
| 760 | 115.99 | radiation | 20 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 763 | 116.00 | radiation | 20 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 769 | 116.02 | temperature | 30 | 90 | < th | dose independent | rect. | 17 | 14 |
| 795 | 116.06 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 23 |
| 811 | 116.10 | wind | 3 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 813 | 116.10 | radiation | 20 | 30 | < th | dose dependent | sin | 21 | NA |
| 814 | 116.10 | humidity | 80 | 30 | < th | dose dependent | rect. | 10 | 23 |
| 881 | 116.13 | humidity | 70 | 90 | > th | dose independent | rect. | 17 | 2 |
| 887 | 116.14 | humidity | 70 | 90 | > th | dose independent | rect. | 15 | 16 |
| 889 | 116.14 | wind | 1 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 896 | 116.15 | radiation | 20 | 30 | < th | dose dependent | no | NA | NA |
| 897 | 116.15 | radiation | 20 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 909 | 116.17 | radiation | 20 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 958 | 116.25 | wind | 3 | 14400 | < th | dose dependent | sin | 10 | NA |
| 959 | 116.25 | humidity | 80 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 965 | 116.26 | humidity | 70 | 30 | > th | dose independent | rect. | 5 | 21 |
| 998 | 116.30 | humidity | 80 | 10 | < th | dose dependent | no | NA | NA |