Os01g0304300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF616 family protein.
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Os01g0304300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF616 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.73 | 0.366 | 7.15 | 1.04 | 0.439 | -1.64 | 0.103 | 1.45 | 0.411 | 23.6 | 14.99 | 647 | -- | -- |
| 62.24 | 0.367 | 7.17 | 0.81 | 0.457 | -1.63 | 0.309 | -- | 0.361 | 23.8 | 14.8 | 662 | -- | -- |
| 60.75 | 0.363 | 7.14 | 1.05 | 0.415 | -1.67 | -- | 1.62 | 0.418 | 23.3 | 14.9 | 603 | -- | -- |
| 62.56 | 0.368 | 7.18 | 0.775 | 0.442 | -1.63 | -- | -- | 0.347 | 23.6 | 14.8 | 650 | -- | -- |
| 62.93 | 0.369 | 7.16 | 0.937 | -- | -1.6 | -- | 1.3 | 0.348 | -- | 15 | 210 | -- | -- |
| 95.08 | 0.457 | 7.22 | 0.377 | 0.393 | -- | 0.331 | -- | 0.0926 | 3.46 | -- | -- | -- | -- |
| 95.42 | 0.457 | 7.22 | 0.372 | 0.395 | -- | -- | -- | 0.0907 | 3.5 | -- | -- | -- | -- |
| 63.46 | 0.371 | 7.17 | 0.714 | -- | -1.66 | -- | -- | 0.327 | -- | 14.8 | 105 | -- | -- |
| 75.94 | 0.408 | 7.19 | -- | 0.13 | -1.44 | -- | -- | 0.225 | 9.29 | 14.9 | 482 | -- | -- |
| 104.14 | 0.477 | 7.22 | 0.388 | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
| 99.06 | 0.466 | 7.23 | -- | 0.402 | -- | -- | -- | 0.0493 | 3.5 | -- | -- | -- | -- |
| 75.99 | 0.406 | 7.2 | -- | -- | -1.4 | -- | -- | 0.219 | -- | 15 | 102 | -- | -- |
| 108.11 | 0.485 | 7.23 | -- | -- | -- | -- | -- | 0.0581 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.27 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 5 | 58.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 18 |
| 21 | 59.27 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 32 | 59.44 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 95 | 60.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 170 | 60.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 180 | 60.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 225 | 60.91 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 14 |
| 227 | 60.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 8 |
| 232 | 60.94 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 241 | 60.96 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 257 | 61.00 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 309 | 61.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 343 | 61.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 383 | 61.47 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 412 | 61.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 438 | 61.64 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 439 | 61.64 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 447 | 61.66 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 527 | 61.89 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 528 | 61.89 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 715 | 62.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 885 | 62.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 917 | 63.08 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 5 |