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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0198100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF616 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.75 (0.0332) R2 : 0.135
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.709 (0.0854) R2dC : 0.132 R2C : 0.129
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.106 (0.0698) R2dN8 : 0.00571 R2N8 : 0.00278
σ : 0.625
deviance : 178.75
__
_____
C
peak time of C : 7.63
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
166.4 0.606 5.74 2.55 0.703 86.3 -0.189 179 -0.0386 7.72 14.98 603 -- --
171.7 0.615 4.74 0.372 0.718 1.53 -0.325 -- -0.0575 7.8 14.79 582 -- --
166.22 0.6 5.68 2.41 0.709 86.6 -- 179 -0.037 7.75 14.92 560 -- --
168.87 0.605 4.74 0.418 0.707 1.82 -- -- -0.0462 7.73 14.79 630 -- --
193.04 0.647 5.72 2.47 -- 86.7 -- 179 -0.0286 -- 14.92 567 -- --
176.19 0.622 4.75 0.31 0.707 -- -0.204 -- -0.0728 7.66 -- -- -- --
176.3 0.622 4.75 0.305 0.707 -- -- -- -0.0725 7.66 -- -- -- --
196.11 0.652 4.76 0.424 -- 1.78 -- -- -0.0338 -- 14.77 630 -- --
172.86 0.612 4.75 -- 0.722 1.65 -- -- -0.0887 7.73 14.7 629 -- --
203.17 0.666 4.76 0.314 -- -- -- -- -0.0621 -- -- -- -- --
178.75 0.625 4.75 -- 0.709 -- -- -- -0.106 7.63 -- -- -- --
200.53 0.66 4.77 -- -- 1.57 -- -- -0.0854 -- 14.69 629 -- --
205.78 0.67 4.77 -- -- -- -- -- -0.0969 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 158.03 atmosphere 1005.0 10 > th dose dependent rect. 2 2
6 159.91 atmosphere 1005.0 90 > th dose independent rect. 2 1
9 160.48 atmosphere 1005.0 10 > th dose independent rect. 2 2
10 160.77 temperature 15.0 10 > th dose independent rect. 3 23
19 161.96 temperature 15.0 720 > th dose independent rect. 15 12
30 163.02 humidity 60.0 10 > th dose independent rect. 4 22
31 163.14 wind 5.0 90 < th dose independent rect. 2 1
32 163.15 temperature 15.0 90 > th dose independent rect. 10 18
33 163.16 humidity 90.0 90 < th dose independent rect. 2 1
34 163.20 wind 9.0 90 < th dose dependent rect. 2 1
35 163.24 humidity 50.0 10 > th dose dependent rect. 3 23
38 163.27 precipitation 0.1 90 < th dose independent rect. 3 23
39 163.27 precipitation 0.1 90 < th dose dependent rect. 3 23
44 163.32 temperature 10.0 90 > th dose independent rect. 2 1
46 163.32 temperature 30.0 90 < th dose independent rect. 2 1
47 163.32 humidity 50.0 90 > th dose independent rect. 2 1
51 163.32 atmosphere 1010.0 90 < th dose independent rect. 2 1
53 163.32 radiation 1.0 90 < th dose independent rect. 2 1
58 163.32 precipitation 0.1 90 < th dose independent rect. 2 1
60 163.32 radiation 1.0 90 < th dose dependent rect. 2 1
65 163.32 precipitation 0.1 90 < th dose dependent rect. 2 1
66 163.34 temperature 10.0 90 > th dose dependent rect. 2 1
69 163.54 atmosphere 1010.0 30 > th dose dependent rect. 24 10
71 163.64 atmosphere 1015.0 10 < th dose dependent rect. 2 1
76 163.83 wind 9.0 10 < th dose independent rect. 2 1
77 163.83 temperature 10.0 10 > th dose independent rect. 2 1
79 163.83 temperature 30.0 10 < th dose independent rect. 2 1
80 163.83 humidity 50.0 10 > th dose independent rect. 2 1
83 163.83 atmosphere 995.0 10 > th dose independent rect. 2 1
84 163.83 atmosphere 1010.0 10 < th dose independent rect. 2 1
86 163.83 radiation 1.0 10 < th dose independent rect. 2 1
91 163.83 precipitation 0.1 10 < th dose independent rect. 2 1
93 163.83 radiation 1.0 10 < th dose dependent rect. 2 1
98 163.83 precipitation 0.1 10 < th dose dependent rect. 2 1
100 163.85 temperature 30.0 10 < th dose dependent rect. 2 1
102 163.87 radiation 40.0 10 < th dose dependent rect. 3 23
103 163.89 humidity 50.0 10 > th dose dependent rect. 2 1
105 163.90 wind 5.0 10 < th dose independent rect. 2 1
107 163.90 temperature 10.0 10 > th dose dependent rect. 2 1
109 163.92 wind 9.0 10 < th dose dependent rect. 2 1
110 163.94 temperature 15.0 720 < th dose independent rect. 23 1
122 163.94 temperature 15.0 720 < th dose dependent rect. 23 1
139 163.97 wind 1.0 90 > th dose independent rect. 2 1
140 163.98 atmosphere 995.0 90 > th dose independent rect. 3 23
148 164.06 wind 1.0 30 < th dose dependent rect. 2 1
163 164.19 atmosphere 1000.0 90 > th dose dependent rect. 4 6
164 164.22 radiation 20.0 10 < th dose independent rect. 4 22
167 164.25 atmosphere 1015.0 1440 < th dose independent rect. 3 1
206 164.39 atmosphere 1010.0 90 > th dose dependent rect. 8 2
281 164.48 atmosphere 1010.0 270 > th dose dependent rect. 24 6
288 164.56 temperature 15.0 270 > th dose independent rect. 6 21
292 164.59 humidity 90.0 90 < th dose independent rect. 1 4
297 164.63 wind 9.0 4320 < th dose independent rect. 3 1
306 164.70 radiation 1.0 43200 < th dose dependent rect. 3 1
316 164.76 temperature 10.0 1440 > th dose independent rect. 3 1
319 164.76 temperature 30.0 1440 < th dose independent rect. 3 1
323 164.76 humidity 50.0 1440 > th dose independent rect. 3 1
332 164.76 atmosphere 995.0 1440 > th dose independent rect. 3 1
333 164.76 radiation 1.0 1440 < th dose independent rect. 3 1
354 164.76 temperature 10.0 1440 > th dose independent rect. 4 23
357 164.76 radiation 1.0 1440 < th dose dependent rect. 3 1
395 164.89 humidity 50.0 90 > th dose dependent rect. 3 12
400 164.96 atmosphere 1010.0 270 > th dose independent rect. 24 6
415 165.05 humidity 50.0 10 > th dose dependent rect. 4 11
430 165.23 atmosphere 1010.0 10 < th dose independent rect. 7 21
466 165.32 atmosphere 1010.0 10 < th dose independent rect. 10 18
468 165.33 humidity 70.0 10 > th dose independent rect. 4 14
469 165.34 atmosphere 1010.0 270 > th dose independent rect. 5 1
480 165.34 temperature 15.0 720 > th dose independent rect. 20 7
482 165.35 humidity 50.0 10 > th dose dependent rect. 4 14
486 165.38 wind 9.0 30 < th dose independent rect. 3 23
491 165.41 temperature 15.0 720 > th dose independent rect. 23 4
502 165.54 humidity 70.0 30 > th dose independent rect. 4 10
510 165.56 atmosphere 1010.0 10 < th dose independent rect. 6 23
546 165.77 radiation 40.0 90 < th dose independent rect. 3 22
556 165.83 humidity 90.0 270 < th dose independent rect. 23 3
562 165.84 temperature 20.0 270 < th dose dependent rect. 6 1
568 165.86 humidity 70.0 90 > th dose independent rect. 4 7
572 165.86 wind 7.0 30 < th dose dependent rect. 4 6
612 166.03 temperature 15.0 720 > th dose independent rect. 15 20
614 166.04 temperature 15.0 30 > th dose independent rect. 7 21
642 166.09 humidity 70.0 10 > th dose independent rect. 4 8
680 166.22 wind 3.0 10 < th dose dependent rect. 24 4
687 166.25 humidity 90.0 270 < th dose independent rect. 23 5
688 166.25 temperature 30.0 10 < th dose independent rect. 4 6
731 166.42 temperature 15.0 270 > th dose independent rect. 22 14
736 166.44 temperature 15.0 10 > th dose independent rect. 18 10
786 166.63 wind 5.0 30 < th dose independent rect. 4 6
822 166.71 radiation 40.0 30 < th dose independent rect. 4 6
835 166.73 temperature 30.0 90 < th dose independent rect. 10 18
856 166.75 atmosphere 1010.0 10 > th dose independent rect. 24 10
887 166.81 atmosphere 1010.0 90 > th dose independent rect. 23 11
916 166.92 atmosphere 1015.0 90 < th dose independent rect. 3 22
955 166.98 humidity 50.0 90 > th dose dependent rect. 4 7
975 167.04 wind 3.0 10 < th dose dependent rect. 22 6
989 167.07 humidity 90.0 270 < th dose independent rect. 23 13