Os06g0724300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF616 family protein.
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Os06g0724300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF616 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.99 | 0.176 | 10.2 | -0.355 | 0.312 | -0.549 | -0.104 | 0.362 | -0.0675 | 22.8 | 26.6 | 87 | -- | -- |
| 14.17 | 0.175 | 10.2 | -0.296 | 0.318 | -0.571 | -0.0323 | -- | -0.0521 | 22.9 | 26.51 | 87 | -- | -- |
| 14.02 | 0.174 | 10.2 | -0.347 | 0.313 | -0.558 | -- | 0.317 | -0.0646 | 22.9 | 26.75 | 90 | -- | -- |
| 14.16 | 0.175 | 10.2 | -0.295 | 0.316 | -0.578 | -- | -- | -0.0556 | 23 | 26.5 | 86 | -- | -- |
| 16.31 | 0.188 | 10.2 | -0.492 | -- | -0.625 | -- | 1 | -0.0694 | -- | 35.26 | 743 | -- | -- |
| 18.73 | 0.203 | 10.1 | -0.159 | 0.26 | -- | -0.248 | -- | 0.0717 | 20.8 | -- | -- | -- | -- |
| 18.91 | 0.204 | 10.1 | -0.151 | 0.26 | -- | -- | -- | 0.0711 | 21.2 | -- | -- | -- | -- |
| 17.12 | 0.193 | 10.2 | -0.308 | -- | -0.599 | -- | -- | -0.0231 | -- | 40.61 | 796 | -- | -- |
| 16.21 | 0.188 | 10.2 | -- | 0.304 | -0.457 | -- | -- | -0.00121 | 22.5 | 26.3 | 70 | -- | -- |
| 22.81 | 0.223 | 10.1 | -0.151 | -- | -- | -- | -- | 0.0698 | -- | -- | -- | -- | -- |
| 19.51 | 0.207 | 10.1 | -- | 0.26 | -- | -- | -- | 0.088 | 21.1 | -- | -- | -- | -- |
| 19.35 | 0.205 | 10.1 | -- | -- | -0.482 | -- | -- | 0.0264 | -- | 52.46 | 760 | -- | -- |
| 23.41 | 0.226 | 10.1 | -- | -- | -- | -- | -- | 0.0865 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.82 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 3 | 11.89 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 4 | 11.92 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 32 | 12.43 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 46 | 12.64 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 79 | 12.95 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 86 | 12.98 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 97 | 13.05 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 20 | 14 |
| 186 | 13.23 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 192 | 13.25 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 202 | 13.28 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 210 | 13.29 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 22 | 12 |
| 218 | 13.30 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 219 | 13.30 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 236 | 13.32 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 241 | 13.34 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 242 | 13.34 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 246 | 13.35 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 276 | 13.41 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 304 | 13.43 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 309 | 13.43 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 331 | 13.46 | temperature | 15.0 | 720 | > th | dose dependent | sin | 18 | NA |
| 396 | 13.54 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 10 | 16 |
| 423 | 13.56 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 10 | 14 |
| 443 | 13.58 | humidity | 50.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 444 | 13.58 | temperature | 30.0 | 720 | < th | dose dependent | sin | 18 | NA |
| 455 | 13.60 | humidity | 50.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 460 | 13.60 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 574 | 13.68 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 13 | 13 |
| 628 | 13.71 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 639 | 13.71 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 652 | 13.72 | humidity | 50.0 | 43200 | > th | dose independent | sin | 5 | NA |
| 713 | 13.74 | humidity | 50.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 737 | 13.75 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 740 | 13.75 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 741 | 13.75 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 765 | 13.76 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 766 | 13.76 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 781 | 13.76 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 828 | 13.78 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 867 | 13.79 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 896 | 13.80 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 897 | 13.80 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 919 | 13.80 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 14 | 21 |
| 939 | 13.81 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 940 | 13.81 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 950 | 13.81 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 960 | 13.81 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 13 | 22 |