Os01g0749100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF616 family protein.
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Os01g0749100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF616 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.27 | 0.33 | 6.52 | -1.2 | 0.0756 | 0.892 | -1.9 | -2.81 | -0.0719 | 14.8 | 0.1308 | 766 | -- | -- |
| 51.37 | 0.334 | 6.56 | -1.43 | 0.112 | 0.992 | 1.35 | -- | -0.119 | 23 | 0.469 | 889 | -- | -- |
| 51.03 | 0.333 | 6.52 | -1.14 | 0.396 | 0.517 | -- | -3 | -0.0462 | 5.05 | 0.2122 | 1095 | -- | -- |
| 59.88 | 0.36 | 6.53 | -1.27 | 0.528 | 0.68 | -- | -- | -0.0437 | 5.26 | 0.0001481 | 1306 | -- | -- |
| 55.92 | 0.348 | 6.5 | -1.24 | -- | 0.932 | -- | -2.23 | -0.042 | -- | 0.4946 | 917 | -- | -- |
| 59.52 | 0.362 | 6.54 | -1.44 | 0.598 | -- | -1.31 | -- | -0.15 | 7.3 | -- | -- | -- | -- |
| 62.94 | 0.372 | 6.54 | -1.47 | 0.621 | -- | -- | -- | -0.15 | 6.42 | -- | -- | -- | -- |
| 60.64 | 0.363 | 6.53 | -1.4 | -- | 0.867 | -- | -- | -0.103 | -- | 0.5035 | 799 | -- | -- |
| 99 | 0.463 | 6.53 | -- | 0.556 | 1.26 | -- | -- | 0.0278 | 5.55 | 0.05932 | 1371 | -- | -- |
| 82.98 | 0.426 | 6.55 | -1.45 | -- | -- | -- | -- | -0.137 | -- | -- | -- | -- | -- |
| 119.84 | 0.512 | 6.5 | -- | 0.602 | -- | -- | -- | 0.0134 | 6.56 | -- | -- | -- | -- |
| 99.62 | 0.465 | 6.53 | -- | -- | 1.35 | -- | -- | 0.0236 | -- | 3.004e-06 | 5080 | -- | -- |
| 138.69 | 0.55 | 6.52 | -- | -- | -- | -- | -- | 0.0241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 13 |
| 2 | 43.66 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 1 |
| 3 | 43.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 7 | 44.04 | temperature | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 14 | 44.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 19 | 44.44 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 74 | 45.42 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 13 |
| 108 | 45.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 17 |
| 150 | 45.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 279 | 46.49 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 382 | 46.95 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 9 |
| 480 | 47.34 | temperature | 10 | 10 | > th | dose dependent | sin | 1 | NA |
| 547 | 47.60 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 7 |
| 552 | 47.62 | radiation | 1 | 720 | < th | dose dependent | sin | 5 | NA |
| 628 | 47.90 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 9 |
| 675 | 48.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 692 | 48.09 | temperature | 25 | 10 | < th | dose independent | rect. | 4 | 12 |
| 756 | 48.27 | radiation | 1 | 720 | < th | dose dependent | rect. | 18 | 20 |
| 793 | 48.42 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 830 | 48.57 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 14 |
| 841 | 48.60 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 844 | 48.61 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 7 |
| 854 | 48.62 | radiation | 1 | 720 | < th | dose dependent | rect. | 18 | 17 |
| 857 | 48.63 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 864 | 48.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 871 | 48.65 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 888 | 48.69 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 9 |
| 917 | 48.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 925 | 48.80 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 17 |
| 957 | 48.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 977 | 48.93 | temperature | 20 | 720 | > th | dose independent | sin | 2 | NA |
| 987 | 48.95 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 6 |
| 997 | 48.96 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |