BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0153400 Os11g0153400|AK071807
(479 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0153400 Similar to Rac GTPase activating protein 3 (Fr... 855 0.0
Os12g0533400 Similar to Rac GTPase activating protein 1 367 e-102
Os04g0577200 Similar to Rac GTPase activating protein 1 352 4e-97
Os02g0679500 Similar to Rac GTPase activating protein 1 351 6e-97
Os01g0967200 Similar to Rac GTPase activating protein 1 342 4e-94
Os07g0408500 Similar to Rac GTPase activating protein 3 (Fr... 333 2e-91
Os12g0155200 Similar to Rac GTPase activating protein 251 7e-67
>Os11g0153400 Similar to Rac GTPase activating protein 3 (Fragment)
Length = 479
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/479 (88%), Positives = 422/479 (88%)
Query: 1 MTTEVALLRGPTNLASPTSSTLRYLANGDSDVSLPXXXXXXXXXXXXXXXXXXXXXXXRW 60
MTTEVALLRGPTNLASPTSSTLRYLANGDSDVSLP RW
Sbjct: 1 MTTEVALLRGPTNLASPTSSTLRYLANGDSDVSLPRRSSREEESPAGLQEEEEEEEEERW 60
Query: 61 SFXXXXXXXXXXXXXRCSTVQEGGGECGMEIGWPTDVQHVAHVTFDRFHGFLGLPVELEP 120
SF RCSTVQEGGGECGMEIGWPTDVQHVAHVTFDRFHGFLGLPVELEP
Sbjct: 61 SFLALLLELLRKSLLRCSTVQEGGGECGMEIGWPTDVQHVAHVTFDRFHGFLGLPVELEP 120
Query: 121 EVPRRAPSASASVFGVSTESMQCSYDSRGNSVPTILLMMQRRLYEQGGLRAEGIFRINAE 180
EVPRRAPSASASVFGVSTESMQCSYDSRGNSVPTILLMMQRRLYEQGGLRAEGIFRINAE
Sbjct: 121 EVPRRAPSASASVFGVSTESMQCSYDSRGNSVPTILLMMQRRLYEQGGLRAEGIFRINAE 180
Query: 181 NSQEEFVRDQLNSGIVPDGIDIHCLSGLIKAWFRELPSGVLDSIPPEQVMQCQSEEDCAR 240
NSQEEFVRDQLNSGIVPDGIDIHCLSGLIKAWFRELPSGVLDSIPPEQVMQCQSEEDCAR
Sbjct: 181 NSQEEFVRDQLNSGIVPDGIDIHCLSGLIKAWFRELPSGVLDSIPPEQVMQCQSEEDCAR 240
Query: 241 VAKCXXXXXXXXXXWAVNLMADVVQEEQINKMNARNIAMVFAPNMTQMSDPLTALMYAVQ 300
VAKC WAVNLMADVVQEEQINKMNARNIAMVFAPNMTQMSDPLTALMYAVQ
Sbjct: 241 VAKCLPPAEAALLEWAVNLMADVVQEEQINKMNARNIAMVFAPNMTQMSDPLTALMYAVQ 300
Query: 301 VMNFLKMLIQKTLKGRQESNLEDTSLPHKDPSDESGHHKPCXXXXXXXXXXXRRPSFVEE 360
VMNFLKMLIQKTLKGRQESNLEDTSLPHKDPSDESGHHKPC RRPSFVEE
Sbjct: 301 VMNFLKMLIQKTLKGRQESNLEDTSLPHKDPSDESGHHKPCLTLESLLEEESRRPSFVEE 360
Query: 361 EPILNSPAHGTGYNPIEVNPVQGKTAASIAQTSEVQTIIEGSSSCSRPSLTDPPATADPV 420
EPILNSPAHGTGYNPIEVNPVQGKTAASIAQTSEVQTIIEGSSSCSRPSLTDPPATADPV
Sbjct: 361 EPILNSPAHGTGYNPIEVNPVQGKTAASIAQTSEVQTIIEGSSSCSRPSLTDPPATADPV 420
Query: 421 CAEAANSLQRKGSRSLNSRRTRKGKGQSGTSATSSAEKSKGTSIVSRINSKIERIEAWR 479
CAEAANSLQRKGSRSLNSRRTRKGKGQSGTSATSSAEKSKGTSIVSRINSKIERIEAWR
Sbjct: 421 CAEAANSLQRKGSRSLNSRRTRKGKGQSGTSATSSAEKSKGTSIVSRINSKIERIEAWR 479
>Os12g0533400 Similar to Rac GTPase activating protein 1
Length = 364
Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/247 (70%), Positives = 198/247 (80%), Gaps = 1/247 (0%)
Query: 89 MEIGWPTDVQHVAHVTFDRFHGFLGLPVELEPEVPRRAPSASASVFGVSTESMQCSYDSR 148
MEIGWPTDV+HVAHVTFDRFHGFLGLPVE E E+P R PSASASVFGVS ESMQC+YD +
Sbjct: 1 MEIGWPTDVRHVAHVTFDRFHGFLGLPVEFEVEMPCRVPSASASVFGVSAESMQCTYDGK 60
Query: 149 GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEEFVRDQLNSGIVPDGIDIHCLSGL 208
GNSVPTILL MQ RLY QGGL+AEGIFRIN EN QEE VRDQLN G+VP+ ID+HCL+ L
Sbjct: 61 GNSVPTILLHMQERLYAQGGLKAEGIFRINPENDQEEHVRDQLNKGVVPEDIDVHCLASL 120
Query: 209 IKAWFRELPSGVLDSIPPEQVMQCQSEEDCARVAKCXXXXXXXXXXWAVNLMADVVQEEQ 268
IKAWFRELP GVLDS+ PEQV+QC SE + + WAV LMADVV+EE+
Sbjct: 121 IKAWFRELPEGVLDSLSPEQVLQCNSEGEFLELVTLLRPTQAALLNWAVELMADVVEEEE 180
Query: 269 INKMNARNIAMVFAPNMTQMSDPLTALMYAVQVMNFLKMLIQKTLKGRQESNLEDTSLPH 328
+NKMNARNIAMVFAPNMTQMSDPLTALM+AVQVMNFLK LI +TL+ R ++ D + P+
Sbjct: 181 LNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNFLKTLILRTLRERDDAASGDYT-PY 239
Query: 329 KDPSDES 335
P+ S
Sbjct: 240 SSPASSS 246
>Os04g0577200 Similar to Rac GTPase activating protein 1
Length = 479
Score = 352 bits (903), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 167/237 (70%), Positives = 193/237 (81%)
Query: 91 IGWPTDVQHVAHVTFDRFHGFLGLPVELEPEVPRRAPSASASVFGVSTESMQCSYDSRGN 150
IG PTDV+HV+HVTFDRF GFLGLP +LEPEVP PSAS +VFGVS S+QCS+D +GN
Sbjct: 95 IGRPTDVRHVSHVTFDRFGGFLGLPADLEPEVPSPTPSASVNVFGVSPTSLQCSFDHKGN 154
Query: 151 SVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEEFVRDQLNSGIVPDGIDIHCLSGLIK 210
SVPTILLMMQR+LYE+ GL+ EGIFRINAENSQE VR QLNSG+VPD +D+HCL+GLIK
Sbjct: 155 SVPTILLMMQRKLYEREGLKIEGIFRINAENSQEICVRKQLNSGVVPDEVDLHCLAGLIK 214
Query: 211 AWFRELPSGVLDSIPPEQVMQCQSEEDCARVAKCXXXXXXXXXXWAVNLMADVVQEEQIN 270
AWFRELP+GVLDS+ PEQVM C +EEDCA +A WA+NLMADVV+ E N
Sbjct: 215 AWFRELPTGVLDSLTPEQVMHCNTEEDCALLASMLPPVEAALLDWAINLMADVVEHENYN 274
Query: 271 KMNARNIAMVFAPNMTQMSDPLTALMYAVQVMNFLKMLIQKTLKGRQESNLEDTSLP 327
KMNARNIAMVFAPNMTQM+DPLTAL++AVQVMNFLK LI KTLK R+ + T+ P
Sbjct: 275 KMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKTLKEREAAGTPKTTEP 331
>Os02g0679500 Similar to Rac GTPase activating protein 1
Length = 483
Score = 351 bits (901), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 163/223 (73%), Positives = 190/223 (85%)
Query: 99 HVAHVTFDRFHGFLGLPVELEPEVPRRAPSASASVFGVSTESMQCSYDSRGNSVPTILLM 158
HV+HVTFDRF GFLGLP +LEP+VPR APSAS SVFGVS SMQCSYD+RGNSVPTILL
Sbjct: 116 HVSHVTFDRFVGFLGLPADLEPDVPRPAPSASVSVFGVSPTSMQCSYDNRGNSVPTILLT 175
Query: 159 MQRRLYEQGGLRAEGIFRINAENSQEEFVRDQLNSGIVPDGIDIHCLSGLIKAWFRELPS 218
MQ++LY+ GGL+AEGIFRINA+NSQE VR+QLN G+VPDG+D+HCL+GLIKAWFRELPS
Sbjct: 176 MQKKLYQLGGLQAEGIFRINADNSQELHVREQLNMGVVPDGVDMHCLTGLIKAWFRELPS 235
Query: 219 GVLDSIPPEQVMQCQSEEDCARVAKCXXXXXXXXXXWAVNLMADVVQEEQINKMNARNIA 278
GVLDS+ PEQVM C +EE+CA +A WA+NLMADVV+ E NKMNARNIA
Sbjct: 236 GVLDSLTPEQVMHCNTEEECALLASTLPPVEAALLDWAINLMADVVEHENYNKMNARNIA 295
Query: 279 MVFAPNMTQMSDPLTALMYAVQVMNFLKMLIQKTLKGRQESNL 321
MVFAPNMTQM+DPLTAL++AVQVMNFLK LI KT+KGR+E+ +
Sbjct: 296 MVFAPNMTQMADPLTALIHAVQVMNFLKTLILKTVKGREETAM 338
>Os01g0967200 Similar to Rac GTPase activating protein 1
Length = 258
Score = 342 bits (876), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 159/233 (68%), Positives = 189/233 (81%), Gaps = 1/233 (0%)
Query: 89 MEIGWPTDVQHVAHVTFDRFHGFLGLPVELEPEVPRRAPSASASVFGVSTESMQCSYDSR 148
MEIGWPTDV+HVAHVTFDRFHGF GLPVEL+PEV APSAS +VFGVSTESMQCSYD+R
Sbjct: 25 MEIGWPTDVRHVAHVTFDRFHGFQGLPVELQPEVAGNAPSASKTVFGVSTESMQCSYDAR 84
Query: 149 GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEEFVRDQLNSGIVPD-GIDIHCLSG 207
GNSVP+ILL+MQRRLYEQGGL+AEGIFRI A+++QE+ VR+QLNSG++P+ G+D+HCL+G
Sbjct: 85 GNSVPSILLLMQRRLYEQGGLKAEGIFRIAADDAQEQAVREQLNSGVLPEGGVDVHCLAG 144
Query: 208 LIKAWFRELPSGVLDSIPPEQVMQCQSEEDCARVAKCXXXXXXXXXXWAVNLMADVVQEE 267
LIKAWFRELP G+LDS+P +V +CQS +DCAR+ WAV LMADV +EE
Sbjct: 145 LIKAWFRELPGGMLDSLPAAEVTRCQSADDCARLCARLPAAKAALLDWAVQLMADVAREE 204
Query: 268 QINKMNARNIAMVFAPNMTQMSDPLTALMYAVQVMNFLKMLIQKTLKGRQESN 320
+ NKM +RN+AMVFAPNMT DP TAL +AV VMNFL MLI + L Q N
Sbjct: 205 RSNKMGSRNVAMVFAPNMTHAMDPFTALKHAVHVMNFLTMLIDRALNDVQTCN 257
>Os07g0408500 Similar to Rac GTPase activating protein 3 (Fragment)
Length = 487
Score = 333 bits (853), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 167/255 (65%), Positives = 190/255 (74%), Gaps = 4/255 (1%)
Query: 88 GMEIGWPTDVQHVAHVTFDRFHGFLGLPVELEPEVPRRAPSASASVFGVSTESMQCSYDS 147
GMEIGWPTDV+HVAHVTFDR +GFLGLP E E E+P PSASASVFGVS ESMQC +D
Sbjct: 73 GMEIGWPTDVRHVAHVTFDRLNGFLGLPAEFELEIPGHVPSASASVFGVSPESMQCCFDD 132
Query: 148 RGNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEEFVRDQLNSGIVPDGIDIHCLSG 207
GNSVP ILL+MQ RLY Q GL+AEGIFRI ENSQEE VR+QLN G+VPD ID+HCL+
Sbjct: 133 NGNSVPKILLLMQERLYAQDGLKAEGIFRITPENSQEENVREQLNRGLVPDDIDVHCLAS 192
Query: 208 LIKAWFRELPSGVLDSIPPEQVMQCQSEEDCARVAKCXXXXXXXXXXWAVNLMADVVQEE 267
LIKAWFRELP GVLDS+ PEQV+ C +EE+C + + W V MADVV+EE
Sbjct: 193 LIKAWFRELPEGVLDSLSPEQVLHCNTEEECVELVRLLPPTQAALLNWVVEFMADVVEEE 252
Query: 268 QINKMNARNIAMVFAPNMTQMSDPLTALMYAVQVMNFLKMLIQKTLKGRQESNLE----D 323
+ NKMNARN+AMVFAPNMTQMSDPLTALM+AVQVMN LK LI KTL+ R+ E
Sbjct: 253 ESNKMNARNVAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLREREHDESEYSAIS 312
Query: 324 TSLPHKDPSDESGHH 338
+ D DE HH
Sbjct: 313 SQSSSSDELDEMHHH 327
>Os12g0155200 Similar to Rac GTPase activating protein
Length = 129
Score = 251 bits (642), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 117/125 (93%), Positives = 120/125 (96%)
Query: 89 MEIGWPTDVQHVAHVTFDRFHGFLGLPVELEPEVPRRAPSASASVFGVSTESMQCSYDSR 148
MEIGWPTDVQHVAHVTFDRFHGFLGLPVE EPEVPRRAPSASASVFGVSTESMQCSYDSR
Sbjct: 1 MEIGWPTDVQHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASASVFGVSTESMQCSYDSR 60
Query: 149 GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEEFVRDQLNSGIVPDGIDIHCLSGL 208
GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEE VRDQLN GIVP+GID+HCL+GL
Sbjct: 61 GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEELVRDQLNGGIVPEGIDVHCLAGL 120
Query: 209 IKAWF 213
IK F
Sbjct: 121 IKVSF 125
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.129 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,557,620
Number of extensions: 562446
Number of successful extensions: 1488
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1489
Number of HSP's successfully gapped: 7
Length of query: 479
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 374
Effective length of database: 11,553,331
Effective search space: 4320945794
Effective search space used: 4320945794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)