BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0504200 Os10g0504200|AK111107
(230 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0504200 Cytochrome b561 family protein 368 e-102
Os04g0533500 Cytochrome b561 family protein 219 1e-57
Os08g0101700 Similar to Cytochrome b561 (Fragment) 163 1e-40
Os10g0118800 Cytochrome b561 family protein 125 2e-29
Os03g0717200 Cytochrome b561 family protein 113 1e-25
Os08g0384000 Cytochrome b561 family protein 103 9e-23
Os02g0642300 Cytochrome b561 family protein 103 1e-22
>Os10g0504200 Cytochrome b561 family protein
Length = 230
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/212 (88%), Positives = 187/212 (88%)
Query: 19 GMVLLWCVHFRGGLALSSPTNKGLIFNVHPVLMLIGFIILGSEAIMGYKIWPWGHDTNKM 78
GMVLLWCVHFRGGLALSSPTNKGLIFNVHPVLMLIGFIILGSEAIMGYKIWPWGHDTNKM
Sbjct: 19 GMVLLWCVHFRGGLALSSPTNKGLIFNVHPVLMLIGFIILGSEAIMGYKIWPWGHDTNKM 78
Query: 79 VXXXXXXXXXXXGSVGIYAAFKFHNESGIANLYSLHSWVGLGTICLYGVQWIFGFVTFFF 138
V GSVGIYAAFKFHNESGIANLYSLHSWVGLGTICLYGVQWIFGFVTFFF
Sbjct: 79 VHLLLHAIALLLGSVGIYAAFKFHNESGIANLYSLHSWVGLGTICLYGVQWIFGFVTFFF 138
Query: 139 PGASPSLRRAALPWHVRSGLLVYIXXXXXXXXXXXXXXTFLEAGGLGRYSSEALLVNFTA 198
PGASPSLRRAALPWHVRSGLLVYI TFLEAGGLGRYSSEALLVNFTA
Sbjct: 139 PGASPSLRRAALPWHVRSGLLVYILALLAAELGFLEKLTFLEAGGLGRYSSEALLVNFTA 198
Query: 199 VLVILLGSAVVMYVTAPMHNEHSHGYSAVRKP 230
VLVILLGSAVVMYVTAPMHNEHSHGYSAVRKP
Sbjct: 199 VLVILLGSAVVMYVTAPMHNEHSHGYSAVRKP 230
>Os04g0533500 Cytochrome b561 family protein
Length = 236
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/205 (59%), Positives = 145/205 (70%), Gaps = 2/205 (0%)
Query: 24 WCVHFRGGLALSSPTNKGLIFNVHPVLMLIGFIILGSEAIMGYKIWP-WGHDTNKMVXXX 82
WC+ FRGGLA + NK LIFNVHPVLMLIG+IILGSEAIM YKI+P HDT K++
Sbjct: 30 WCISFRGGLAFEA-DNKNLIFNVHPVLMLIGYIILGSEAIMIYKIFPKLNHDTTKLIHLI 88
Query: 83 XXXXXXXXGSVGIYAAFKFHNESGIANLYSLHSWVGLGTICLYGVQWIFGFVTFFFPGAS 142
G+VGIY AFKFHNESGIANLYSLHSW+G+GTI LYG+QWIFGFV FF+PGA+
Sbjct: 89 LHAIAIVLGAVGIYCAFKFHNESGIANLYSLHSWLGIGTISLYGIQWIFGFVAFFYPGAA 148
Query: 143 PSLRRAALPWHVRSGLLVYIXXXXXXXXXXXXXXTFLEAGGLGRYSSEALLVNFTAVLVI 202
P +RR ALPWHV GL VY+ TFL++ GL +Y +EA LVNFT ++V
Sbjct: 149 PHVRRGALPWHVLFGLFVYVLTLATAELGLLEKLTFLQSSGLDKYGAEAFLVNFTGLVVA 208
Query: 203 LLGSAVVMYVTAPMHNEHSHGYSAV 227
L G+AVV+ AP H E GY+ +
Sbjct: 209 LFGAAVVVAAVAPAHVEEPEGYAPI 233
>Os08g0101700 Similar to Cytochrome b561 (Fragment)
Length = 238
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/183 (51%), Positives = 115/183 (62%), Gaps = 6/183 (3%)
Query: 20 MVLLWCVHFRGGLALSSPTNKGLIFNVHPVLMLIGFIILGSEAIMGYK---IWPWGHDTN 76
MVL+WCVHFRGGLAL S NK LIFN HPVLM++G ++L +EAI+ Y+ I D
Sbjct: 31 MVLVWCVHFRGGLALRS-HNKQLIFNTHPVLMVLGLVVLAAEAILSYRSLSIIVSSRDAR 89
Query: 77 KMVXXXXXXXXXXXGSVGIYAAFKFHNESGIANLYSLHSWVGLGTICLYGVQWIFGFVTF 136
K V G VGIYA FK+H E+ I NLYSLHSW+G+ TI LY + W+ F+TF
Sbjct: 90 KKVHLGLHAVGLALGGVGIYAVFKYHAEADIPNLYSLHSWIGIATISLYALHWLLAFLTF 149
Query: 137 FFPGASPSLRRAALPWHVRSGLLVYIXXXXXXXXXXXXXXTFLEAG--GLGRYSSEALLV 194
FFPGAS RR+A+PWH GLLV+ TFL+A L RY +EALLV
Sbjct: 150 FFPGASHDTRRSAVPWHALLGLLVFALAVGNAQLGFLEKLTFLQAPPLRLSRYGAEALLV 209
Query: 195 NFT 197
NFT
Sbjct: 210 NFT 212
>Os10g0118800 Cytochrome b561 family protein
Length = 225
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 108/205 (52%), Gaps = 21/205 (10%)
Query: 20 MVLLWCVHFRGGLALS--SPTNKGLIFNVHPVLMLIGFIILGSEAIMGYKIWPWGHDTNK 77
+ L+W +HFRGG++ S + L++ HP+ M+IG +I EAIM Y+I + K
Sbjct: 30 LTLVWVLHFRGGVSWSWHRSSTPQLVYTAHPLFMVIGLVICTGEAIMAYRIMLGSREVKK 89
Query: 78 MVXXXXXXXXXXXGSVGIYAAFKFHNESGIANLYSLHSWVGLGTICLYGVQWIFGFVTFF 137
V +VG+YAAFKFH++ ++ SLH+W+G+ T LY QW+ GFV F
Sbjct: 90 AVHLLLHLVALAFAAVGLYAAFKFHHDLRAPDIRSLHAWLGITTAALYAFQWLVGFVYFV 149
Query: 138 FPGASPSLRRAALPWHVRSGLLVYIXXXXXXXXXXXXXXTFLEAGGLGR-------YSSE 190
FPGA ++R PWH+ G+++++ GL R Y SE
Sbjct: 150 FPGAVMTMRADYAPWHILLGIVIFLMAICT------------AETGLARFIFPFHGYPSE 197
Query: 191 ALLVNFTAVLVILLGSAVVMYVTAP 215
A +VNFT + +++ G AVV+ P
Sbjct: 198 AFVVNFTGLAILMFGVAVVVAAILP 222
>Os03g0717200 Cytochrome b561 family protein
Length = 228
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 99/184 (53%), Gaps = 7/184 (3%)
Query: 20 MVLLWCVHFRGGLALSSPTNKGLIFNVHPVLMLIGFIILGSEAIMGYKIWPWGHDTNKMV 79
++L+W +HFRGG+ + S + IFNVHP +M GFI+L EAI+ Y P H T KMV
Sbjct: 35 LMLVWLLHFRGGINIQSDDPEQ-IFNVHPFVMCWGFILLIGEAILAYTTIPMDHRTQKMV 93
Query: 80 XXXXXXXXXXXGSVGIYAAFKFHNESGIANLYSLHSWVGLGTICLYGVQWIFGFVTFFFP 139
G+YAAFKFH+ + +L SLHSW+G+ + L+G+QW+FGF F+ P
Sbjct: 94 HMLVHLVALILAIFGVYAAFKFHDAAVAPDLVSLHSWLGILAVALFGLQWLFGFFAFWLP 153
Query: 140 GASPSLRRAALPWHVRSGLLVYIXXXXXXXXXXXXXXTFLEAGGLGRYSSEALLVNFTAV 199
G R AA P HV +GL +++ + G EA L+N T +
Sbjct: 154 GTHERTRAAAAPAHVAAGLAIFMLAVCAAETGLVQKSAAAASAG------EAKLINVTGI 207
Query: 200 LVIL 203
++L
Sbjct: 208 FILL 211
>Os08g0384000 Cytochrome b561 family protein
Length = 142
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 67/110 (60%)
Query: 27 HFRGGLALSSPTNKGLIFNVHPVLMLIGFIILGSEAIMGYKIWPWGHDTNKMVXXXXXXX 86
HFRGG+ALSS T+K LIFNVHPVLMLIG ++L EAI+ YK P K+V
Sbjct: 32 HFRGGMALSSETDKLLIFNVHPVLMLIGLVVLNGEAILAYKTVPGTKKLKKLVHLALQFL 91
Query: 87 XXXXGSVGIYAAFKFHNESGIANLYSLHSWVGLGTICLYGVQWIFGFVTF 136
+G++ +KFH+E I +LY+LHSW+GL I + +Q +F
Sbjct: 92 AMLLSLIGLWTVWKFHDERQIDHLYTLHSWLGLSCIIFFSLQVDIELCSF 141
>Os02g0642300 Cytochrome b561 family protein
Length = 103
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 65/102 (63%)
Query: 128 QWIFGFVTFFFPGASPSLRRAALPWHVRSGLLVYIXXXXXXXXXXXXXXTFLEAGGLGRY 187
QWIFGFV FFFP ASPS+R+ LPWH+ GL VYI TFL++ GL +Y
Sbjct: 1 QWIFGFVAFFFPRASPSVRKGVLPWHILFGLFVYILALATAELGFLEKLTFLQSSGLDKY 60
Query: 188 SSEALLVNFTAVLVILLGSAVVMYVTAPMHNEHSHGYSAVRK 229
+EA LVNFTA++V+L G++VV+ +P E H Y+ + +
Sbjct: 61 GAEAFLVNFTALIVVLFGASVVVAAVSPARVEEPHEYAPIPE 102
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.143 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,400,383
Number of extensions: 219190
Number of successful extensions: 481
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 7
Length of query: 230
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 133
Effective length of database: 11,971,043
Effective search space: 1592148719
Effective search space used: 1592148719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)