Os03g0717200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome b561 family protein.
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Os03g0717200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome b561 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.73 | 0.49 | 3.3 | -0.605 | 0.288 | 0.763 | 0.123 | -2.78 | 0.081 | 2.43 | 25.42 | 892 | -- | -- |
| 110.85 | 0.49 | 3.25 | -0.131 | 0.269 | 0.507 | 0.0121 | -- | 0.154 | 1.3 | 24.17 | 943 | -- | -- |
| 108.79 | 0.486 | 3.3 | -0.6 | 0.285 | 0.76 | -- | -2.71 | 0.0816 | 2.44 | 25.4 | 897 | -- | -- |
| 110.63 | 0.49 | 3.24 | -0.1 | 0.272 | 0.501 | -- | -- | 0.185 | 1.85 | 24.69 | 916 | -- | -- |
| 112.64 | 0.494 | 3.31 | -0.676 | -- | 0.823 | -- | -2.68 | 0.0434 | -- | 24.9 | 980 | -- | -- |
| 116.59 | 0.506 | 3.23 | 0.0288 | 0.366 | -- | 0.0782 | -- | 0.235 | 0.512 | -- | -- | -- | -- |
| 116.62 | 0.506 | 3.23 | 0.0258 | 0.365 | -- | -- | -- | 0.234 | 0.515 | -- | -- | -- | -- |
| 114.65 | 0.499 | 3.24 | -0.137 | -- | 0.58 | -- | -- | 0.166 | -- | 24.4 | 978 | -- | -- |
| 110.87 | 0.49 | 3.24 | -- | 0.28 | 0.475 | -- | -- | 0.201 | 1.8 | 24.8 | 907 | -- | -- |
| 125 | 0.522 | 3.23 | 0.0385 | -- | -- | -- | -- | 0.24 | -- | -- | -- | -- | -- |
| 116.64 | 0.505 | 3.23 | -- | 0.366 | -- | -- | -- | 0.231 | 0.518 | -- | -- | -- | -- |
| 115 | 0.499 | 3.24 | -- | -- | 0.556 | -- | -- | 0.189 | -- | 24.43 | 978 | -- | -- |
| 125.04 | 0.522 | 3.23 | -- | -- | -- | -- | -- | 0.236 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.03 | humidity | 70 | 10 | < th | dose dependent | rect. | 18 | 14 |
| 3 | 98.84 | humidity | 70 | 10 | < th | dose independent | rect. | 18 | 14 |
| 20 | 99.65 | humidity | 80 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 24 | 99.70 | humidity | 80 | 90 | < th | dose independent | rect. | 5 | 2 |
| 25 | 99.70 | radiation | 30 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 58 | 99.71 | radiation | 30 | 30 | > th | dose independent | rect. | 7 | 1 |
| 163 | 99.78 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 223 | 99.78 | humidity | 70 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 673 | 103.72 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 742 | 105.32 | humidity | 70 | 90 | < th | dose independent | sin | 11 | NA |
| 743 | 105.32 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 13 |
| 744 | 105.34 | radiation | 30 | 30 | < th | dose independent | sin | 11 | NA |
| 774 | 105.68 | humidity | 70 | 90 | > th | dose independent | sin | 11 | NA |
| 775 | 105.69 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 3 |
| 777 | 105.70 | humidity | 80 | 1440 | < th | dose independent | rect. | 4 | 4 |
| 784 | 105.76 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 794 | 105.87 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 802 | 105.96 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 3 |
| 807 | 106.10 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 809 | 106.12 | humidity | 70 | 10 | > th | dose independent | sin | 10 | NA |
| 837 | 106.41 | humidity | 80 | 1440 | < th | dose dependent | rect. | 4 | 4 |
| 851 | 106.55 | temperature | 25 | 10 | > th | dose independent | rect. | 18 | 7 |
| 855 | 106.65 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 12 |
| 856 | 106.68 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 9 |
| 905 | 106.87 | temperature | 25 | 10 | > th | dose independent | rect. | 18 | 10 |
| 906 | 106.88 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 10 |
| 917 | 106.93 | temperature | 25 | 720 | > th | dose dependent | sin | 15 | NA |
| 951 | 107.04 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 10 |
| 971 | 107.17 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 12 |
| 974 | 107.18 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 4 |
| 977 | 107.20 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 11 |
| 981 | 107.21 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 5 |
| 990 | 107.24 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 1 |