BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0717200 Os03g0717200|Os03g0717200
(228 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14730.1 | chr1:5073244-5074568 FORWARD LENGTH=225 156 7e-39
AT4G25570.1 | chr4:13053887-13055518 REVERSE LENGTH=240 139 2e-33
AT5G38630.1 | chr5:15466141-15467511 FORWARD LENGTH=231 135 2e-32
AT1G26100.1 | chr1:9022716-9024081 REVERSE LENGTH=237 97 7e-21
>AT1G14730.1 | chr1:5073244-5074568 FORWARD LENGTH=225
Length = 224
Score = 156 bits (395), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 110/181 (60%), Gaps = 2/181 (1%)
Query: 34 VLMLVWLLHFRGGINIQSDDPEQIFNVHPFVMCWGFILLIGEAILAYTTIPMDHRTQKMV 93
VLML+WLLH+R GI SD+P ++ NVHPF+M GF+ L+G+A++ Y T H+ QKMV
Sbjct: 30 VLMLIWLLHYREGIEYGSDNPLKVLNVHPFLMYCGFLFLVGQAMMTYKTAYASHQVQKMV 89
Query: 94 HMLVHLVALILAIFGVYAAFKFHDAAVAPDLVSLHSWLGILAVALFGLQWLFGFFAFWLP 153
H +HL+ L+L I G+ AAF+FHD D+VSLHSW+G+ L G+QWLFG F F P
Sbjct: 90 HGGLHLIGLVLGIVGICAAFRFHDKVNLKDMVSLHSWIGLTTFILLGVQWLFGAFTFLAP 149
Query: 154 GTHERTRXXXXXXXXXXXXXIFMLAVCAAETGLVQKXXX--XXXXGEAKLINVTGIFILL 211
+ TR + + + AA TGL+Q+ E++LIN G+ ILL
Sbjct: 150 QSSSGTRTRMMPWHVLGGRALLYMGIVAALTGLMQRATMLGQSTNAESRLINFLGLAILL 209
Query: 212 Y 212
+
Sbjct: 210 F 210
>AT4G25570.1 | chr4:13053887-13055518 REVERSE LENGTH=240
Length = 239
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 115/191 (60%), Gaps = 6/191 (3%)
Query: 28 LFLTTAVLMLVWLLHFRGGINIQSDDPEQIFNVHPFVMCWGFILLIGEAILAYTTIPMDH 87
L + A+++LVW + +RGG+ ++ + IFN+HP +M GFI+L GEAI++Y ++P++
Sbjct: 17 LAVIAAIMVLVWSISYRGGLAWEATNKNLIFNLHPVLMLIGFIILGGEAIISYKSLPLEK 76
Query: 88 RTQKMVHMLVHLVALILAIFGVYAAFKFHDAAVAPDLVSLHSWLGILAVALFGLQWLFGF 147
+K++H+++H +AL L IFG+ AAFK H+ + P+L SLHSW+GI ++L+G QW++ F
Sbjct: 77 PVKKLIHLILHAIALALGIFGICAAFKNHNESHIPNLYSLHSWIGIGVISLYGFQWVYSF 136
Query: 148 FAFWLPGTHERTRXXXXXXXXXXXXXIFMLAVCAAETGLVQKXXXXXXXG------EAKL 201
F+ PG + +++LAV A G ++K G EA L
Sbjct: 137 IVFFFPGGSTNLKSGLLPWHAMLGLFVYILAVGNAALGFLEKLTFLENGGLDKYGSEAFL 196
Query: 202 INVTGIFILLY 212
IN T I +L+
Sbjct: 197 INFTAIITILF 207
>AT5G38630.1 | chr5:15466141-15467511 FORWARD LENGTH=231
Length = 230
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 102/186 (54%), Gaps = 7/186 (3%)
Query: 33 AVLMLVWLLHFRGGINIQSDDPEQIFNVHPFVMCWGFILLIGEAILAYTTIPMDHRTQKM 92
A L+L W +H+RGG+ + SD+ + IFNVHP +M G IL GEA+LAY ++ +K+
Sbjct: 23 AALVLTWTVHYRGGLALSSDNKDHIFNVHPVMMVIGLILFNGEAMLAYKSVQGTKNLKKL 82
Query: 93 VHMLVHLVALILAIFGVYAAFKFHDAAVAPDLVSLHSWLGILAVALFGLQWLFGFFAFWL 152
VH+ + L A IL++ GV+AA KFH + SLHSWLG+ + LF QW GF +W
Sbjct: 83 VHLTLQLTAFILSLIGVWAALKFHIDKGIENFYSLHSWLGLACLFLFAFQWAAGFVTYWY 142
Query: 153 PGTHERTRXXXXXXXXXXXXXIFMLAVCAAETGLVQKXX-------XXXXXGEAKLINVT 205
PG +R I+ LA+ A TG+++K EA L+N
Sbjct: 143 PGGSRNSRASLMPWHVFLGISIYALALVTATTGILEKVTFLQVNQVITRYSTEAMLVNTM 202
Query: 206 GIFILL 211
G+ IL+
Sbjct: 203 GVLILI 208
>AT1G26100.1 | chr1:9022716-9024081 REVERSE LENGTH=237
Length = 236
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 1/131 (0%)
Query: 59 NVHPFVMCWGFILLIGEAILAYTTIPMDHRTQKMVHMLVHLVALILAIFGVYAAFKFHDA 118
+HP +M GFIL+ GEAIL + +P +T+K VH+ + +AL A+FG++ F +
Sbjct: 42 TLHPLLMVIGFILVSGEAILIHRWLPGSRKTKKAVHLWLQGMALASAVFGIWTKFHYQRG 101
Query: 119 AVAPDLVSLHSWLGILAVALFGLQWLFGFFAFWLPGTHERTRXXXXXXXXXXXXXIFMLA 178
A + SLHSW+G+L+V+LF QW+ GF +FW G TR + LA
Sbjct: 102 VFA-NFYSLHSWMGLLSVSLFAAQWVTGFMSFWHRGEVRTTRTTFLPWHVFLGLYTYGLA 160
Query: 179 VCAAETGLVQK 189
+ AETGL++K
Sbjct: 161 IATAETGLLEK 171
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.336 0.147 0.480
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,355,792
Number of extensions: 109209
Number of successful extensions: 346
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 4
Length of query: 228
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 133
Effective length of database: 8,502,049
Effective search space: 1130772517
Effective search space used: 1130772517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 110 (47.0 bits)