BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0717200 Os03g0717200|Os03g0717200
(228 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0717200 Cytochrome b561 family protein 334 3e-92
Os04g0533500 Cytochrome b561 family protein 138 4e-33
Os10g0504200 Cytochrome b561 family protein 126 1e-29
Os10g0118800 Cytochrome b561 family protein 119 2e-27
Os08g0101700 Similar to Cytochrome b561 (Fragment) 115 2e-26
Os08g0384000 Cytochrome b561 family protein 94 1e-19
>Os03g0717200 Cytochrome b561 family protein
Length = 228
Score = 334 bits (856), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 172/201 (85%), Positives = 172/201 (85%)
Query: 28 LFLTTAVLMLVWLLHFRGGINIQSDDPEQIFNVHPFVMCWGFILLIGEAILAYTTIPMDH 87
LFLTTAVLMLVWLLHFRGGINIQSDDPEQIFNVHPFVMCWGFILLIGEAILAYTTIPMDH
Sbjct: 28 LFLTTAVLMLVWLLHFRGGINIQSDDPEQIFNVHPFVMCWGFILLIGEAILAYTTIPMDH 87
Query: 88 RTQKMVHMLVHLVALILAIFGVYAAFKFHDAAVAPDLVSLHSWLGILAVALFGLQWLFGF 147
RTQKMVHMLVHLVALILAIFGVYAAFKFHDAAVAPDLVSLHSWLGILAVALFGLQWLFGF
Sbjct: 88 RTQKMVHMLVHLVALILAIFGVYAAFKFHDAAVAPDLVSLHSWLGILAVALFGLQWLFGF 147
Query: 148 FAFWLPGTHERTRXXXXXXXXXXXXXIFMLAVCAAETGLVQKXXXXXXXGEAKLINVTGI 207
FAFWLPGTHERTR IFMLAVCAAETGLVQK GEAKLINVTGI
Sbjct: 148 FAFWLPGTHERTRAAAAPAHVAAGLAIFMLAVCAAETGLVQKSAAAASAGEAKLINVTGI 207
Query: 208 FILLYXXXXXXXXXLRKAFFY 228
FILLY LRKAFFY
Sbjct: 208 FILLYAVAVAVAVALRKAFFY 228
>Os04g0533500 Cytochrome b561 family protein
Length = 236
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 106/176 (60%), Gaps = 7/176 (3%)
Query: 39 WLLHFRGGINIQSDDPEQIFNVHPFVMCWGFILLIGEAILAYTTIP-MDHRTQKMVHMLV 97
W + FRGG+ ++D+ IFNVHP +M G+I+L EAI+ Y P ++H T K++H+++
Sbjct: 30 WCISFRGGLAFEADNKNLIFNVHPVLMLIGYIILGSEAIMIYKIFPKLNHDTTKLIHLIL 89
Query: 98 HLVALILAIFGVYAAFKFHDAAVAPDLVSLHSWLGILAVALFGLQWLFGFFAFWLPGTHE 157
H +A++L G+Y AFKFH+ + +L SLHSWLGI ++L+G+QW+FGF AF+ PG
Sbjct: 90 HAIAIVLGAVGIYCAFKFHNESGIANLYSLHSWLGIGTISLYGIQWIFGFVAFFYPGAAP 149
Query: 158 RTRXXXXXXXXXXXXXIFMLAVCAAETGLVQKXXXXXXXG------EAKLINVTGI 207
R +++L + AE GL++K G EA L+N TG+
Sbjct: 150 HVRRGALPWHVLFGLFVYVLTLATAELGLLEKLTFLQSSGLDKYGAEAFLVNFTGL 205
>Os10g0504200 Cytochrome b561 family protein
Length = 230
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 110/184 (59%), Gaps = 7/184 (3%)
Query: 35 LMLVWLLHFRGGINIQSDDPEQ-IFNVHPFVMCWGFILLIGEAILAYTTIPMDHRTQKMV 93
++L+W +HFRGG+ + S + IFNVHP +M GFI+L EAI+ Y P H T KMV
Sbjct: 20 MVLLWCVHFRGGLALSSPTNKGLIFNVHPVLMLIGFIILGSEAIMGYKIWPWGHDTNKMV 79
Query: 94 HMLVHLVALILAIFGVYAAFKFHDAAVAPDLVSLHSWLGILAVALFGLQWLFGFFAFWLP 153
H+L+H +AL+L G+YAAFKFH+ + +L SLHSW+G+ + L+G+QW+FGF F+ P
Sbjct: 80 HLLLHAIALLLGSVGIYAAFKFHNESGIANLYSLHSWVGLGTICLYGVQWIFGFVTFFFP 139
Query: 154 GTHERTRXXXXXXXXXXXXXIFMLAVCAAETGLVQKXXXXXXXG------EAKLINVTGI 207
G R +++LA+ AAE G ++K G EA L+N T +
Sbjct: 140 GASPSLRRAALPWHVRSGLLVYILALLAAELGFLEKLTFLEAGGLGRYSSEALLVNFTAV 199
Query: 208 FILL 211
++L
Sbjct: 200 LVIL 203
>Os10g0118800 Cytochrome b561 family protein
Length = 225
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 104/182 (57%), Gaps = 4/182 (2%)
Query: 35 LMLVWLLHFRGGINI---QSDDPEQIFNVHPFVMCWGFILLIGEAILAYTTIPMDHRTQK 91
L LVW+LHFRGG++ +S P+ ++ HP M G ++ GEAI+AY + +K
Sbjct: 30 LTLVWVLHFRGGVSWSWHRSSTPQLVYTAHPLFMVIGLVICTGEAIMAYRIMLGSREVKK 89
Query: 92 MVHMLVHLVALILAIFGVYAAFKFHDAAVAPDLVSLHSWLGILAVALFGLQWLFGFFAFW 151
VH+L+HLVAL A G+YAAFKFH APD+ SLH+WLGI AL+ QWL GF F
Sbjct: 90 AVHLLLHLVALAFAAVGLYAAFKFHHDLRAPDIRSLHAWLGITTAALYAFQWLVGFVYFV 149
Query: 152 LPGTHERTRXXXXXXXXXXXXXIFMLAVCAAETGLVQKXXXX-XXXGEAKLINVTGIFIL 210
PG R IF++A+C AETGL + EA ++N TG+ IL
Sbjct: 150 FPGAVMTMRADYAPWHILLGIVIFLMAICTAETGLARFIFPFHGYPSEAFVVNFTGLAIL 209
Query: 211 LY 212
++
Sbjct: 210 MF 211
>Os08g0101700 Similar to Cytochrome b561 (Fragment)
Length = 238
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 92/158 (58%), Gaps = 3/158 (1%)
Query: 35 LMLVWLLHFRGGINIQSDDPEQIFNVHPFVMCWGFILLIGEAILAYTTIPM---DHRTQK 91
++LVW +HFRGG+ ++S + + IFN HP +M G ++L EAIL+Y ++ + +K
Sbjct: 31 MVLVWCVHFRGGLALRSHNKQLIFNTHPVLMVLGLVVLAAEAILSYRSLSIIVSSRDARK 90
Query: 92 MVHMLVHLVALILAIFGVYAAFKFHDAAVAPDLVSLHSWLGILAVALFGLQWLFGFFAFW 151
VH+ +H V L L G+YA FK+H A P+L SLHSW+GI ++L+ L WL F F+
Sbjct: 91 KVHLGLHAVGLALGGVGIYAVFKYHAEADIPNLYSLHSWIGIATISLYALHWLLAFLTFF 150
Query: 152 LPGTHERTRXXXXXXXXXXXXXIFMLAVCAAETGLVQK 189
PG TR +F LAV A+ G ++K
Sbjct: 151 FPGASHDTRRSAVPWHALLGLLVFALAVGNAQLGFLEK 188
>Os08g0384000 Cytochrome b561 family protein
Length = 142
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Query: 42 HFRGGINIQSD-DPEQIFNVHPFVMCWGFILLIGEAILAYTTIPMDHRTQKMVHMLVHLV 100
HFRGG+ + S+ D IFNVHP +M G ++L GEAILAY T+P + +K+VH+ + +
Sbjct: 32 HFRGGMALSSETDKLLIFNVHPVLMLIGLVVLNGEAILAYKTVPGTKKLKKLVHLALQFL 91
Query: 101 ALILAIFGVYAAFKFHDAAVAPDLVSLHSWLGILAVALFGLQ 142
A++L++ G++ +KFHD L +LHSWLG+ + F LQ
Sbjct: 92 AMLLSLIGLWTVWKFHDERQIDHLYTLHSWLGLSCIIFFSLQ 133
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.336 0.147 0.480
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,238,750
Number of extensions: 170149
Number of successful extensions: 503
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 496
Number of HSP's successfully gapped: 6
Length of query: 228
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 131
Effective length of database: 11,971,043
Effective search space: 1568206633
Effective search space used: 1568206633
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 154 (63.9 bits)