Os08g0384000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome b561 family protein.
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Os08g0384000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome b561 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.12 | 0.382 | 10.4 | 0.486 | 0.617 | 0.141 | -0.237 | -1.88 | 0.24 | 0.711 | 19.1 | 1667 | -- | -- |
| 68.62 | 0.386 | 10.3 | 0.605 | 0.584 | 0.663 | -0.17 | -- | 0.254 | 0.622 | 18.1 | 2829 | -- | -- |
| 66.36 | 0.379 | 10.4 | 0.497 | 0.618 | 0.133 | -- | -1.88 | 0.242 | 0.703 | 19.08 | 1658 | -- | -- |
| 68.71 | 0.386 | 10.3 | 0.606 | 0.591 | 0.677 | -- | -- | 0.259 | 0.579 | 18.08 | 2804 | -- | -- |
| 88.16 | 0.437 | 10.4 | 0.422 | -- | 0.288 | -- | -1.43 | 0.211 | -- | 18.9 | 2488 | -- | -- |
| 74.03 | 0.403 | 10.3 | 0.871 | 0.608 | -- | -0.184 | -- | 0.361 | 0.761 | -- | -- | -- | -- |
| 74.17 | 0.403 | 10.3 | 0.878 | 0.608 | -- | -- | -- | 0.362 | 0.751 | -- | -- | -- | -- |
| 89.3 | 0.44 | 10.3 | 0.557 | -- | 0.731 | -- | -- | 0.234 | -- | 18.36 | 2404 | -- | -- |
| 71.94 | 0.395 | 10.3 | -- | 0.612 | 0.839 | -- | -- | 0.179 | 0.401 | 16.7 | 24290 | -- | -- |
| 97.3 | 0.461 | 10.3 | 0.9 | -- | -- | -- | -- | 0.373 | -- | -- | -- | -- | -- |
| 94.49 | 0.455 | 10.3 | -- | 0.622 | -- | -- | -- | 0.264 | 0.816 | -- | -- | -- | -- |
| 94.2 | 0.452 | 10.3 | -- | -- | 0.844 | -- | -- | 0.151 | -- | 16.3 | 41298 | -- | -- |
| 118.66 | 0.508 | 10.3 | -- | -- | -- | -- | -- | 0.273 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.53 | wind | 1.0 | 30 | < th | dose independent | rect. | 15 | 1 |
| 3 | 53.53 | wind | 1.0 | 30 | < th | dose dependent | rect. | 15 | 1 |
| 5 | 53.62 | humidity | 90.0 | 90 | > th | dose independent | rect. | 14 | 1 |
| 8 | 53.62 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 14 | 1 |
| 43 | 56.11 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 14 | 3 |
| 55 | 57.48 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 14 | 3 |
| 88 | 59.71 | wind | 1.0 | 30 | < th | dose dependent | rect. | 10 | 6 |
| 211 | 65.09 | wind | 1.0 | 270 | < th | dose dependent | rect. | 12 | 4 |
| 222 | 65.38 | wind | 1.0 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 232 | 65.49 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 21 | 3 |
| 258 | 65.89 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 259 | 65.89 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 262 | 65.93 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 2 |
| 271 | 66.03 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 4 |
| 274 | 66.05 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 275 | 66.05 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 283 | 66.12 | wind | 1.0 | 270 | < th | dose independent | rect. | 12 | 4 |
| 285 | 66.15 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 2 |
| 290 | 66.23 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 305 | 66.31 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 347 | 66.54 | wind | 1.0 | 270 | < th | dose independent | rect. | 12 | 1 |
| 368 | 66.63 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 369 | 66.64 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 404 | 66.77 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 12 | 15 |
| 407 | 66.79 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 413 | 66.79 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 422 | 66.80 | temperature | 20.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 430 | 66.83 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 20 | 12 |
| 444 | 66.85 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 450 | 66.87 | temperature | 20.0 | 1440 | < th | dose independent | sin | 14 | NA |
| 451 | 66.87 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 458 | 66.88 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 473 | 66.92 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 485 | 66.95 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 492 | 66.98 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 506 | 67.01 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 520 | 67.04 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 539 | 67.07 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 540 | 67.07 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 541 | 67.07 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 582 | 67.13 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 583 | 67.14 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 593 | 67.15 | wind | 7.0 | 720 | < th | dose independent | rect. | 13 | 20 |
| 642 | 67.21 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 676 | 67.25 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 20 |
| 710 | 67.30 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 713 | 67.30 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 741 | 67.33 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 742 | 67.33 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 760 | 67.34 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 770 | 67.34 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 777 | 67.35 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 791 | 67.36 | wind | 5.0 | 90 | < th | dose independent | rect. | 22 | 21 |
| 828 | 67.40 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 839 | 67.41 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 859 | 67.43 | temperature | 20.0 | 30 | > th | dose independent | rect. | 16 | 23 |
| 862 | 67.44 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 905 | 67.47 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 21 | 8 |
| 920 | 67.49 | temperature | 20.0 | 1440 | > th | dose independent | no | NA | NA |
| 968 | 67.53 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 974 | 67.54 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 980 | 67.55 | temperature | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 981 | 67.55 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 19 | 5 |