BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0384000 Os08g0384000|J090052O10
(142 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0384000 Cytochrome b561 family protein 229 5e-61
Os10g0504200 Cytochrome b561 family protein 99 8e-22
Os04g0533500 Cytochrome b561 family protein 83 6e-17
Os03g0717200 Cytochrome b561 family protein 79 1e-15
Os10g0118800 Cytochrome b561 family protein 77 3e-15
Os08g0101700 Similar to Cytochrome b561 (Fragment) 70 5e-13
>Os08g0384000 Cytochrome b561 family protein
Length = 142
Score = 229 bits (584), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 116/142 (81%), Positives = 116/142 (81%)
Query: 1 MAAAPAARFPVFGIVRLLGLXXXXXXXXXXXHFRGGMALSSETDKLLIFNVHPVLMLIGL 60
MAAAPAARFPVFGIVRLLGL HFRGGMALSSETDKLLIFNVHPVLMLIGL
Sbjct: 1 MAAAPAARFPVFGIVRLLGLAAAAAIVVWAVHFRGGMALSSETDKLLIFNVHPVLMLIGL 60
Query: 61 VVLNGEAILAYKTVPGTKKLKKXXXXXXXXXXXXXXXIGLWTVWKFHDERQIDHLYTLHS 120
VVLNGEAILAYKTVPGTKKLKK IGLWTVWKFHDERQIDHLYTLHS
Sbjct: 61 VVLNGEAILAYKTVPGTKKLKKLVHLALQFLAMLLSLIGLWTVWKFHDERQIDHLYTLHS 120
Query: 121 WLGLSCIIFFSLQVDIELCSFQ 142
WLGLSCIIFFSLQVDIELCSFQ
Sbjct: 121 WLGLSCIIFFSLQVDIELCSFQ 142
>Os10g0504200 Cytochrome b561 family protein
Length = 230
Score = 99.4 bits (246), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 65/110 (59%)
Query: 32 HFRGGMALSSETDKLLIFNVHPVLMLIGLVVLNGEAILAYKTVPGTKKLKKXXXXXXXXX 91
HFRGG+ALSS T+K LIFNVHPVLMLIG ++L EAI+ YK P K
Sbjct: 27 HFRGGLALSSPTNKGLIFNVHPVLMLIGFIILGSEAIMGYKIWPWGHDTNKMVHLLLHAI 86
Query: 92 XXXXXXIGLWTVWKFHDERQIDHLYTLHSWLGLSCIIFFSLQVDIELCSF 141
+G++ +KFH+E I +LY+LHSW+GL I + +Q +F
Sbjct: 87 ALLLGSVGIYAAFKFHNESGIANLYSLHSWVGLGTICLYGVQWIFGFVTF 136
>Os04g0533500 Cytochrome b561 family protein
Length = 236
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 33 FRGGMALSSETDKLLIFNVHPVLMLIGLVVLNGEAILAYKTVPG-TKKLKKXXXXXXXXX 91
FRGG+A ++ +K LIFNVHPVLMLIG ++L EAI+ YK P K
Sbjct: 34 FRGGLAFEAD-NKNLIFNVHPVLMLIGYIILGSEAIMIYKIFPKLNHDTTKLIHLILHAI 92
Query: 92 XXXXXXIGLWTVWKFHDERQIDHLYTLHSWLGLSCIIFFSLQ 133
+G++ +KFH+E I +LY+LHSWLG+ I + +Q
Sbjct: 93 AIVLGAVGIYCAFKFHNESGIANLYSLHSWLGIGTISLYGIQ 134
>Os03g0717200 Cytochrome b561 family protein
Length = 228
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 32 HFRGGMALSSETDKLLIFNVHPVLMLIGLVVLNGEAILAYKTVPGTKKLKKXXXXXXXXX 91
HFRGG+ + S+ D IFNVHP +M G ++L GEAILAY T+P + +K
Sbjct: 42 HFRGGINIQSD-DPEQIFNVHPFVMCWGFILLIGEAILAYTTIPMDHRTQKMVHMLVHLV 100
Query: 92 XXXXXXIGLWTVWKFHDERQIDHLYTLHSWLGLSCIIFFSLQ 133
G++ +KFHD L +LHSWLG+ + F LQ
Sbjct: 101 ALILAIFGVYAAFKFHDAAVAPDLVSLHSWLGILAVALFGLQ 142
>Os10g0118800 Cytochrome b561 family protein
Length = 225
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 2/126 (1%)
Query: 10 PVFGIVRLLGLXXXXXXXXXXXHFRGGMALS--SETDKLLIFNVHPVLMLIGLVVLNGEA 67
PV + +LL HFRGG++ S + L++ HP+ M+IGLV+ GEA
Sbjct: 15 PVVVVAQLLAAAVLTLTLVWVLHFRGGVSWSWHRSSTPQLVYTAHPLFMVIGLVICTGEA 74
Query: 68 ILAYKTVPGTKKLKKXXXXXXXXXXXXXXXIGLWTVWKFHDERQIDHLYTLHSWLGLSCI 127
I+AY+ + G++++KK +GL+ +KFH + + + +LH+WLG++
Sbjct: 75 IMAYRIMLGSREVKKAVHLLLHLVALAFAAVGLYAAFKFHHDLRAPDIRSLHAWLGITTA 134
Query: 128 IFFSLQ 133
++ Q
Sbjct: 135 ALYAFQ 140
>Os08g0101700 Similar to Cytochrome b561 (Fragment)
Length = 238
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 70/113 (61%), Gaps = 4/113 (3%)
Query: 32 HFRGGMALSSETDKLLIFNVHPVLMLIGLVVLNGEAILAYKT---VPGTKKLKKXXXXXX 88
HFRGG+AL S +K LIFN HPVLM++GLVVL EAIL+Y++ + ++ +K
Sbjct: 38 HFRGGLALRSH-NKQLIFNTHPVLMVLGLVVLAAEAILSYRSLSIIVSSRDARKKVHLGL 96
Query: 89 XXXXXXXXXIGLWTVWKFHDERQIDHLYTLHSWLGLSCIIFFSLQVDIELCSF 141
+G++ V+K+H E I +LY+LHSW+G++ I ++L + +F
Sbjct: 97 HAVGLALGGVGIYAVFKYHAEADIPNLYSLHSWIGIATISLYALHWLLAFLTF 149
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.144 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,916,301
Number of extensions: 109170
Number of successful extensions: 183
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 6
Length of query: 142
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 51
Effective length of database: 12,284,327
Effective search space: 626500677
Effective search space used: 626500677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 151 (62.8 bits)