FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0118800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome b561 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.87 (0.0371) R2 : 0.437
β1 : -1.44 (0.139) R2dD : 0.144 R2D : 0.0224
β2 : 1.25 (0.149) R2dC : 0.243 R2C : -0.504
β3 : 3.36 (0.211) R2dE : 0.915 R2E : 0.0516
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.354 (0.0824) R2dN8 : 0.0346 R2N8 : -0.0477
σ : 0.684
deviance : 215.45
__
_____
C
peak time of C : 2.35
E
wheather : temperature
threshold : 13.04
memory length : 593
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 23.2
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
211.52 0.683 4.87 -1.39 1.36 3.58 -0.878 0.541 -0.356 1.56 10.43 678 24 --
210.72 0.676 4.87 -1.44 0.92 3 -1.19 -- -0.37 2.53 14.03 622 23.6 --
211.61 0.678 4.84 -1.22 1.19 3.25 -- 1.75 -0.298 2.36 12.85 611 23.3 --
215.45 0.684 4.87 -1.44 1.25 3.36 -- -- -0.354 2.35 13.04 593 23.2 --
244.63 0.728 4.82 -1.15 -- 2.55 -- 2.26 -0.251 -- 6.14 2054 0.131 --
299.03 0.811 4.75 -0.881 0.947 -- 1.34 -- 0.0531 11.3 -- -- -- --
306.3 0.82 4.75 -0.829 0.947 -- -- -- 0.056 10.9 -- -- -- --
249.1 0.735 4.86 -1.47 -- 2.57 -- -- -0.325 -- 4.963 2063 0.324 --
263.75 0.756 4.83 -- 1.76 3.66 -- -- -0.119 1.2 6.354 565 23 --
361.99 0.889 4.77 -0.85 -- -- -- -- 0.0494 -- -- -- -- --
324.43 0.843 4.73 -- 0.954 -- -- -- 0.148 11 -- -- -- --
266.78 0.761 4.85 -- -- 1.94 -- -- -0.223 -- 16.7 594 0.589 --
381.03 0.911 4.75 -- -- -- -- -- 0.144 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 200.18 temperature 10 270 > th dose dependent rect. 3 14
3 201.18 temperature 15 30 > th dose dependent rect. 5 15
4 202.49 temperature 20 720 > th dose dependent rect. 4 4
47 211.36 temperature 10 720 > th dose dependent rect. 21 18
48 211.61 temperature 20 720 > th dose dependent rect. 23 10
50 211.68 temperature 30 720 < th dose dependent rect. 24 10
59 212.72 temperature 10 720 > th dose dependent sin 6 NA
87 215.01 temperature 20 720 > th dose dependent rect. 21 13
159 218.29 temperature 30 720 < th dose dependent sin 6 NA
173 218.90 temperature 30 270 < th dose dependent rect. 7 7
208 220.15 temperature 30 720 < th dose dependent rect. 7 2
242 221.03 temperature 10 720 > th dose dependent rect. 4 10
301 222.48 temperature 30 270 < th dose independent rect. 7 20
309 222.60 temperature 30 90 < th dose independent rect. 9 19
373 223.75 temperature 30 270 < th dose independent rect. 6 22
468 225.33 temperature 30 270 < th dose dependent rect. 9 1
472 225.39 temperature 25 270 < th dose independent rect. 7 5
504 226.05 temperature 30 90 < th dose dependent rect. 7 22
672 228.77 temperature 30 270 < th dose dependent rect. 7 20
744 229.93 temperature 10 270 > th dose dependent sin 1 NA
800 230.81 temperature 30 30 < th dose dependent rect. 9 20
866 231.65 temperature 10 270 > th dose dependent rect. 12 23
918 232.60 temperature 10 270 > th dose dependent rect. 10 23