BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0118800 Os10g0118800|Os10g0118800
(225 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0118800 Cytochrome b561 family protein 338 2e-93
Os10g0504200 Cytochrome b561 family protein 114 5e-26
Os04g0533500 Cytochrome b561 family protein 107 5e-24
Os08g0101700 Similar to Cytochrome b561 (Fragment) 103 1e-22
Os03g0717200 Cytochrome b561 family protein 98 5e-21
Os02g0642300 Cytochrome b561 family protein 78 5e-15
>Os10g0118800 Cytochrome b561 family protein
Length = 225
Score = 338 bits (866), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 174/225 (77%), Positives = 174/225 (77%)
Query: 1 MPVKSSASFRXXXXXXXXXXXXXXXXXXXXXXXXXXHFRGGVSWSWHRSSTPQLVYTAHP 60
MPVKSSASFR HFRGGVSWSWHRSSTPQLVYTAHP
Sbjct: 1 MPVKSSASFRLTALPVVVVAQLLAAAVLTLTLVWVLHFRGGVSWSWHRSSTPQLVYTAHP 60
Query: 61 LFMVIGLVICTGEAIMAYRIMLGSREXXXXXXXXXXXXXXXXXXXXXXXXXKFHHDLRAP 120
LFMVIGLVICTGEAIMAYRIMLGSRE KFHHDLRAP
Sbjct: 61 LFMVIGLVICTGEAIMAYRIMLGSREVKKAVHLLLHLVALAFAAVGLYAAFKFHHDLRAP 120
Query: 121 DIRSLHAWLGITTAALYAFQWLVGFVYFVFPGAVMTMRADYAPWHILLGIVIFLMAICTA 180
DIRSLHAWLGITTAALYAFQWLVGFVYFVFPGAVMTMRADYAPWHILLGIVIFLMAICTA
Sbjct: 121 DIRSLHAWLGITTAALYAFQWLVGFVYFVFPGAVMTMRADYAPWHILLGIVIFLMAICTA 180
Query: 181 ETGLARFIFPFHGYPSEAFVVNFTGLAILMFGVAVVVAAILPSRY 225
ETGLARFIFPFHGYPSEAFVVNFTGLAILMFGVAVVVAAILPSRY
Sbjct: 181 ETGLARFIFPFHGYPSEAFVVNFTGLAILMFGVAVVVAAILPSRY 225
>Os10g0504200 Cytochrome b561 family protein
Length = 230
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 100/191 (52%), Gaps = 7/191 (3%)
Query: 37 HFRGGVSWSWHRSSTPQLVYTAHPLFMVIGLVICTGEAIMAYRIMLGSREXXXXXXXXXX 96
HFRGG++ S + L++ HP+ M+IG +I EAIM Y+I +
Sbjct: 27 HFRGGLALS--SPTNKGLIFNVHPVLMLIGFIILGSEAIMGYKIWPWGHDTNKMVHLLLH 84
Query: 97 XXXXXXXXXXXXXXXKFHHDLRAPDIRSLHAWLGITTAALYAFQWLVGFVYFVFPGAVMT 156
KFH++ ++ SLH+W+G+ T LY QW+ GFV F FPGA +
Sbjct: 85 AIALLLGSVGIYAAFKFHNESGIANLYSLHSWVGLGTICLYGVQWIFGFVTFFFPGASPS 144
Query: 157 MRADYAPWHILLGIVIFLMAICTAETG-LARFIFPFHG----YPSEAFVVNFTGLAILMF 211
+R PWH+ G++++++A+ AE G L + F G Y SEA +VNFT + +++
Sbjct: 145 LRRAALPWHVRSGLLVYILALLAAELGFLEKLTFLEAGGLGRYSSEALLVNFTAVLVILL 204
Query: 212 GVAVVVAAILP 222
G AVV+ P
Sbjct: 205 GSAVVMYVTAP 215
>Os04g0533500 Cytochrome b561 family protein
Length = 236
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 92/175 (52%), Gaps = 9/175 (5%)
Query: 38 FRGGVSWSWHRSSTPQLVYTAHPLFMVIGLVICTGEAIMAYRIMLG-SREXXXXXXXXXX 96
FRGG+++ + L++ HP+ M+IG +I EAIM Y+I + +
Sbjct: 34 FRGGLAF---EADNKNLIFNVHPVLMLIGYIILGSEAIMIYKIFPKLNHDTTKLIHLILH 90
Query: 97 XXXXXXXXXXXXXXXKFHHDLRAPDIRSLHAWLGITTAALYAFQWLVGFVYFVFPGAVMT 156
KFH++ ++ SLH+WLGI T +LY QW+ GFV F +PGA
Sbjct: 91 AIAIVLGAVGIYCAFKFHNESGIANLYSLHSWLGIGTISLYGIQWIFGFVAFFYPGAAPH 150
Query: 157 MRADYAPWHILLGIVIFLMAICTAETG-LARFIF----PFHGYPSEAFVVNFTGL 206
+R PWH+L G+ ++++ + TAE G L + F Y +EAF+VNFTGL
Sbjct: 151 VRRGALPWHVLFGLFVYVLTLATAELGLLEKLTFLQSSGLDKYGAEAFLVNFTGL 205
>Os08g0101700 Similar to Cytochrome b561 (Fragment)
Length = 238
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 95/178 (53%), Gaps = 13/178 (7%)
Query: 37 HFRGGVSWSWHRSSTPQLVYTAHPLFMVIGLVICTGEAIMAYR---IMLGSREXXXXXXX 93
HFRGG++ RS QL++ HP+ MV+GLV+ EAI++YR I++ SR+
Sbjct: 38 HFRGGLAL---RSHNKQLIFNTHPVLMVLGLVVLAAEAILSYRSLSIIVSSRDARKKVHL 94
Query: 94 XXXXXXXXXXXXXXXXXXKFHHDLRAPDIRSLHAWLGITTAALYAFQWLVGFVYFVFPGA 153
K+H + P++ SLH+W+GI T +LYA WL+ F+ F FPGA
Sbjct: 95 GLHAVGLALGGVGIYAVFKYHAEADIPNLYSLHSWIGIATISLYALHWLLAFLTFFFPGA 154
Query: 154 VMTMRADYAPWHILLGIVIFLMAICTAETG-LARFIF------PFHGYPSEAFVVNFT 204
R PWH LLG+++F +A+ A+ G L + F Y +EA +VNFT
Sbjct: 155 SHDTRRSAVPWHALLGLLVFALAVGNAQLGFLEKLTFLQAPPLRLSRYGAEALLVNFT 212
>Os03g0717200 Cytochrome b561 family protein
Length = 228
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 86/175 (49%), Gaps = 4/175 (2%)
Query: 37 HFRGGVSWSWHRSSTPQLVYTAHPLFMVIGLVICTGEAIMAYRIMLGSREXXXXXXXXXX 96
HFRGG++ +S P+ ++ HP M G ++ GEAI+AY +
Sbjct: 42 HFRGGINI---QSDDPEQIFNVHPFVMCWGFILLIGEAILAYTTIPMDHRTQKMVHMLVH 98
Query: 97 XXXXXXXXXXXXXXXKFHHDLRAPDIRSLHAWLGITTAALYAFQWLVGFVYFVFPGAVMT 156
KFH APD+ SLH+WLGI AL+ QWL GF F PG
Sbjct: 99 LVALILAIFGVYAAFKFHDAAVAPDLVSLHSWLGILAVALFGLQWLFGFFAFWLPGTHER 158
Query: 157 MRADYAPWHILLGIVIFLMAICTAETGLARFIFPFHGYPSEAFVVNFTGLAILMF 211
RA AP H+ G+ IF++A+C AETGL + EA ++N TG+ IL++
Sbjct: 159 TRAAAAPAHVAAGLAIFMLAVCAAETGLVQKSAAA-ASAGEAKLINVTGIFILLY 212
>Os02g0642300 Cytochrome b561 family protein
Length = 103
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 59/90 (65%), Gaps = 5/90 (5%)
Query: 140 QWLVGFVYFVFPGAVMTMRADYAPWHILLGIVIFLMAICTAETG-LARFIF----PFHGY 194
QW+ GFV F FP A ++R PWHIL G+ ++++A+ TAE G L + F Y
Sbjct: 1 QWIFGFVAFFFPRASPSVRKGVLPWHILFGLFVYILALATAELGFLEKLTFLQSSGLDKY 60
Query: 195 PSEAFVVNFTGLAILMFGVAVVVAAILPSR 224
+EAF+VNFT L +++FG +VVVAA+ P+R
Sbjct: 61 GAEAFLVNFTALIVVLFGASVVVAAVSPAR 90
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.333 0.142 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,685,711
Number of extensions: 178720
Number of successful extensions: 554
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 545
Number of HSP's successfully gapped: 6
Length of query: 225
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 128
Effective length of database: 11,971,043
Effective search space: 1532293504
Effective search space used: 1532293504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 154 (63.9 bits)