Os02g0642300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome b561 family protein.
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Os02g0642300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome b561 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.35 | 0.25 | 10.2 | 0.0572 | 1.19 | -0.532 | -0.533 | -0.224 | 0.177 | 16.7 | 0.47 | 89 | -- | -- |
| 28.59 | 0.249 | 10.2 | 0.0485 | 1.2 | -0.532 | -0.436 | -- | 0.178 | 16.7 | 0.4138 | 85 | -- | -- |
| 28.96 | 0.251 | 10.2 | 0.0496 | 1.18 | -0.518 | -- | -0.0887 | 0.172 | 16.7 | 0.469 | 87 | -- | -- |
| 28.98 | 0.251 | 10.2 | 0.0575 | 1.2 | -0.52 | -- | -- | 0.176 | 16.7 | 0.4618 | 87 | -- | -- |
| 46.98 | 0.319 | 10.2 | 0.0825 | -- | -1.07 | -- | -0.748 | 0.23 | -- | 1.55 | 347 | -- | -- |
| 32.73 | 0.268 | 10.1 | 0.0828 | 1.57 | -- | -0.0982 | -- | 0.213 | 15.3 | -- | -- | -- | -- |
| 32.76 | 0.268 | 10.1 | 0.0809 | 1.57 | -- | -- | -- | 0.212 | 15.3 | -- | -- | -- | -- |
| 35.99 | 0.279 | 10.1 | -0.0471 | -- | -1.37 | -- | -- | 0.207 | -- | 1.43 | 435 | -- | -- |
| 29.04 | 0.251 | 10.2 | -- | 1.2 | -0.512 | -- | -- | 0.169 | 16.7 | 0.47 | 85 | -- | -- |
| 172.4 | 0.614 | 10.2 | 0.0142 | -- | -- | -- | -- | 0.171 | -- | -- | -- | -- | -- |
| 32.93 | 0.268 | 10.2 | -- | 1.57 | -- | -- | -- | 0.203 | 15.3 | -- | -- | -- | -- |
| 35.18 | 0.276 | 10.2 | -- | -- | -1.44 | -- | -- | 0.146 | -- | 1.46 | 440 | -- | -- |
| 172.4 | 0.613 | 10.2 | -- | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.32 | radiation | 1.0 | 90 | < th | dose dependent | sin | 19 | NA |
| 5 | 24.54 | radiation | 1.0 | 90 | < th | dose independent | sin | 17 | NA |
| 9 | 24.75 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 16 | 5 |
| 11 | 24.84 | radiation | 1.0 | 90 | > th | dose independent | sin | 19 | NA |
| 16 | 25.00 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 23 | 19 |
| 24 | 25.13 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 20 |
| 28 | 25.19 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 12 |
| 30 | 25.20 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 4 |
| 35 | 25.25 | radiation | 10.0 | 270 | < th | dose independent | rect. | 16 | 5 |
| 36 | 25.26 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 16 | 5 |
| 40 | 25.28 | radiation | 1.0 | 270 | < th | dose independent | rect. | 17 | 3 |
| 43 | 25.29 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 13 |
| 62 | 25.36 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 13 | 10 |
| 63 | 25.36 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 11 | 12 |
| 72 | 25.43 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 4 |
| 86 | 25.49 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 22 | 21 |
| 109 | 25.54 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 8 |
| 117 | 25.55 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 24 | 19 |
| 151 | 25.73 | wind | 9.0 | 270 | < th | dose dependent | rect. | 17 | 4 |
| 158 | 25.77 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 11 | 7 |
| 186 | 25.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 20 |
| 191 | 25.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 20 |
| 198 | 25.98 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 4 |
| 199 | 25.98 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 4 |
| 202 | 25.99 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 17 | 4 |
| 221 | 26.05 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 20 |
| 222 | 26.05 | wind | 9.0 | 270 | < th | dose dependent | rect. | 18 | 2 |
| 239 | 26.11 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 20 |
| 247 | 26.14 | temperature | 25.0 | 90 | > th | dose independent | rect. | 11 | 7 |
| 266 | 26.23 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 4 |
| 267 | 26.23 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 13 | 5 |
| 269 | 26.23 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 5 | 13 |
| 285 | 26.28 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 2 |
| 290 | 26.29 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 23 | 19 |
| 292 | 26.29 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 23 | 19 |
| 294 | 26.30 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 2 |
| 296 | 26.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 22 |
| 298 | 26.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 22 |
| 306 | 26.35 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 4 |
| 317 | 26.38 | temperature | 25.0 | 90 | > th | dose independent | rect. | 13 | 5 |
| 343 | 26.44 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 20 |
| 350 | 26.46 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 2 |
| 351 | 26.46 | radiation | 20.0 | 270 | < th | dose independent | rect. | 18 | 2 |
| 354 | 26.46 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 22 |
| 364 | 26.48 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 2 |
| 374 | 26.50 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 13 | 2 |
| 395 | 26.53 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 11 | 13 |
| 405 | 26.54 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 18 | 4 |
| 406 | 26.54 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 13 | 11 |
| 431 | 26.57 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 15 | 9 |
| 445 | 26.60 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 22 |
| 498 | 26.68 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 8 | 14 |
| 541 | 26.73 | radiation | 1.0 | 90 | > th | dose independent | rect. | 13 | 16 |
| 550 | 26.74 | humidity | 70.0 | 10 | > th | dose independent | rect. | 18 | 4 |
| 557 | 26.74 | radiation | 1.0 | 90 | > th | dose independent | rect. | 13 | 6 |
| 567 | 26.74 | temperature | 10.0 | 90 | > th | dose independent | rect. | 23 | 19 |
| 579 | 26.75 | wind | 9.0 | 90 | < th | dose independent | rect. | 23 | 19 |
| 591 | 26.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 4 |
| 592 | 26.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 4 |
| 606 | 26.79 | wind | 1.0 | 270 | > th | dose independent | rect. | 18 | 2 |
| 615 | 26.80 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 22 |
| 760 | 26.97 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 17 |
| 863 | 27.08 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 19 |
| 878 | 27.09 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 22 |
| 929 | 27.13 | humidity | 90.0 | 90 | < th | dose independent | rect. | 13 | 5 |
| 941 | 27.15 | temperature | 25.0 | 10 | > th | dose independent | rect. | 12 | 7 |
| 972 | 27.18 | temperature | 25.0 | 90 | > th | dose independent | rect. | 9 | 9 |
| 993 | 27.19 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 994 | 27.19 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 21 | 10 |