Os04g0533500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome b561 family protein.
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Os04g0533500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome b561 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.27 | 0.298 | 13.2 | 0.308 | 0.372 | -1.12 | -0.0965 | -0.624 | -0.0826 | 21 | 20.5 | 1433 | -- | -- |
| 40.95 | 0.298 | 13.2 | 0.408 | 0.368 | -1.01 | -0.113 | -- | -0.0593 | 20.9 | 20.67 | 1470 | -- | -- |
| 40.23 | 0.295 | 13.2 | 0.301 | 0.375 | -1.11 | -- | -0.634 | -0.0793 | 21 | 20.62 | 1443 | -- | -- |
| 40.99 | 0.298 | 13.2 | 0.419 | 0.368 | -1.02 | -- | -- | -0.0545 | 20.9 | 20.64 | 1470 | -- | -- |
| 48.09 | 0.323 | 13.2 | 0.339 | -- | -1.1 | -- | -0.531 | -0.0686 | -- | 20.65 | 1487 | -- | -- |
| 64.51 | 0.377 | 13.3 | -0.0113 | 0.369 | -- | -0.213 | -- | -0.293 | 20.6 | -- | -- | -- | -- |
| 64.66 | 0.377 | 13.3 | -0.00463 | 0.37 | -- | -- | -- | -0.293 | 20.7 | -- | -- | -- | -- |
| 48.65 | 0.325 | 13.2 | 0.431 | -- | -1.06 | -- | -- | -0.0598 | -- | 20.6 | 1512 | -- | -- |
| 44.52 | 0.311 | 13.2 | -- | 0.378 | -0.791 | -- | -- | -0.112 | 20.7 | 21.2 | 1446 | -- | -- |
| 72.37 | 0.398 | 13.2 | -0.00552 | -- | -- | -- | -- | -0.296 | -- | -- | -- | -- | -- |
| 64.66 | 0.376 | 13.3 | -- | 0.37 | -- | -- | -- | -0.293 | 20.7 | -- | -- | -- | -- |
| 52.31 | 0.337 | 13.2 | -- | -- | -0.797 | -- | -- | -0.116 | -- | 21.29 | 1469 | -- | -- |
| 72.37 | 0.397 | 13.2 | -- | -- | -- | -- | -- | -0.296 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 13 |
| 10 | 39.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 13 |
| 15 | 39.44 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 42 | 39.60 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 47 | 39.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 87 | 39.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 173 | 40.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 203 | 40.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 241 | 40.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 255 | 40.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 283 | 40.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 297 | 40.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 14 |
| 300 | 40.78 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 357 | 40.93 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 7 |
| 365 | 40.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 369 | 40.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 370 | 40.96 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 371 | 40.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 381 | 40.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 400 | 41.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 426 | 41.05 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 451 | 41.09 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 494 | 41.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 527 | 41.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 547 | 41.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 591 | 41.32 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 674 | 41.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 689 | 41.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 989 | 42.31 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 993 | 42.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 22 |