BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0533500 Os04g0533500|AK061426
(236 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25570.1 | chr4:13053887-13055518 REVERSE LENGTH=240 192 1e-49
AT5G38630.1 | chr5:15466141-15467511 FORWARD LENGTH=231 134 4e-32
AT1G14730.1 | chr1:5073244-5074568 FORWARD LENGTH=225 103 9e-23
AT1G26100.1 | chr1:9022716-9024081 REVERSE LENGTH=237 97 9e-21
>AT4G25570.1 | chr4:13053887-13055518 REVERSE LENGTH=240
Length = 239
Score = 192 bits (488), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 98/199 (49%), Positives = 121/199 (60%), Gaps = 1/199 (0%)
Query: 7 VKAAPFTYXXXXXXXXXXXXXXXWCISFRGGLAFEADNKNLIFNVHPVLMLIGYIILGSE 66
+ A T+ W IS+RGGLA+EA NKNLIFN+HPVLMLIG+IILG E
Sbjct: 5 INAMAVTFVAHALAVIAAIMVLVWSISYRGGLAWEATNKNLIFNLHPVLMLIGFIILGGE 64
Query: 67 AIMIYKIFPKLNHDTTKXXXXXXXXXXXXXGAVGIYCAFKFHNESGIANLYSLHSWLGIG 126
AI+ YK P L K G GI AFK HNES I NLYSLHSW+GIG
Sbjct: 65 AIISYKSLP-LEKPVKKLIHLILHAIALALGIFGICAAFKNHNESHIPNLYSLHSWIGIG 123
Query: 127 TISLYGIQWIFGFVAFFYPGAAPHVRRGALPWHVLFGLFVYVXXXXXXXXXXXXXXXFLQ 186
ISLYG QW++ F+ FF+PG + +++ G LPWH + GLFVY+ FL+
Sbjct: 124 VISLYGFQWVYSFIVFFFPGGSTNLKSGLLPWHAMLGLFVYILAVGNAALGFLEKLTFLE 183
Query: 187 SSGLDKYGAEAFLVNFTGL 205
+ GLDKYG+EAFL+NFT +
Sbjct: 184 NGGLDKYGSEAFLINFTAI 202
>AT5G38630.1 | chr5:15466141-15467511 FORWARD LENGTH=231
Length = 230
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 95/177 (53%), Gaps = 2/177 (1%)
Query: 30 WCISFRGGLAFEADNKNLIFNVHPVLMLIGYIILGSEAIMIYKIFPKLNHDTTKXXXXXX 89
W + +RGGLA +DNK+ IFNVHPV+M+IG I+ EA++ YK + K
Sbjct: 29 WTVHYRGGLALSSDNKDHIFNVHPVMMVIGLILFNGEAMLAYKSVQG-TKNLKKLVHLTL 87
Query: 90 XXXXXXXGAVGIYCAFKFHNESGIANLYSLHSWLGIGTISLYGIQWIFGFVAFFYPGAAP 149
+G++ A KFH + GI N YSLHSWLG+ + L+ QW GFV ++YPG +
Sbjct: 88 QLTAFILSLIGVWAALKFHIDKGIENFYSLHSWLGLACLFLFAFQWAAGFVTYWYPGGSR 147
Query: 150 HVRRGALPWHVLFGLFVYVXXXXXXXXXXXXXXXFLQ-SSGLDKYGAEAFLVNFTGL 205
+ R +PWHV G+ +Y FLQ + + +Y EA LVN G+
Sbjct: 148 NSRASLMPWHVFLGISIYALALVTATTGILEKVTFLQVNQVITRYSTEAMLVNTMGV 204
>AT1G14730.1 | chr1:5073244-5074568 FORWARD LENGTH=225
Length = 224
Score = 103 bits (256), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 7/177 (3%)
Query: 30 WCISFRGGLAFEADNKNLIFNVHPVLMLIGYIILGSEAIMIYKIFPKLNHDTTKXXXXXX 89
W + +R G+ + +DN + NVHP LM G++ L +A+M YK +H K
Sbjct: 35 WLLHYREGIEYGSDNPLKVLNVHPFLMYCGFLFLVGQAMMTYKT-AYASHQVQKMVHGGL 93
Query: 90 XXXXXXXGAVGIYCAFKFHNESGIANLYSLHSWLGIGTISLYGIQWIFGFVAFFYPGAAP 149
G VGI AF+FH++ + ++ SLHSW+G+ T L G+QW+FG F P ++
Sbjct: 94 HLIGLVLGIVGICAAFRFHDKVNLKDMVSLHSWIGLTTFILLGVQWLFGAFTFLAPQSSS 153
Query: 150 HVRRGALPWHVLFGL-FVYVXXXXXXXXXXXXXXXFLQSSGLDKYGAEAFLVNFTGL 205
R +PWHVL G +Y+ QS+ AE+ L+NF GL
Sbjct: 154 GTRTRMMPWHVLGGRALLYMGIVAALTGLMQRATMLGQST-----NAESRLINFLGL 205
>AT1G26100.1 | chr1:9022716-9024081 REVERSE LENGTH=237
Length = 236
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 5/154 (3%)
Query: 50 NVHPVLMLIGYIILGSEAIMIYKIFPKLNHDTTKXXXXXXXXXXXXXGAVGIYCAFKFHN 109
+HP+LM+IG+I++ EAI+I++ P + T K GI+ KFH
Sbjct: 42 TLHPLLMVIGFILVSGEAILIHRWLPG-SRKTKKAVHLWLQGMALASAVFGIWT--KFHY 98
Query: 110 ESGI-ANLYSLHSWLGIGTISLYGIQWIFGFVAFFYPGAAPHVRRGALPWHVLFGLFVYV 168
+ G+ AN YSLHSW+G+ ++SL+ QW+ GF++F++ G R LPWHV GL+ Y
Sbjct: 99 QRGVFANFYSLHSWMGLLSVSLFAAQWVTGFMSFWHRGEVRTTRTTFLPWHVFLGLYTYG 158
Query: 169 XXXXXXXXXXXXXXXFLQSS-GLDKYGAEAFLVN 201
FLQ+ + + G+E+ VN
Sbjct: 159 LAIATAETGLLEKLTFLQTKRNVPRRGSESMTVN 192
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.146 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,746,890
Number of extensions: 120403
Number of successful extensions: 329
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 4
Length of query: 236
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 141
Effective length of database: 8,502,049
Effective search space: 1198788909
Effective search space used: 1198788909
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 110 (47.0 bits)