Os08g0101700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cytochrome b561 (Fragment).
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Os08g0101700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cytochrome b561 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.65 | 0.483 | 11.5 | -0.307 | 2.6 | -0.898 | 0.479 | 1.51 | -0.662 | 7.23 | 19.96 | 1265 | -- | -- |
| 110.29 | 0.489 | 11.5 | -0.242 | 2.58 | -0.853 | 0.73 | -- | -0.624 | 7.24 | 19.5 | 1252 | -- | -- |
| 106.23 | 0.48 | 11.5 | -0.305 | 2.6 | -0.897 | -- | 1.6 | -0.665 | 7.22 | 19.93 | 1263 | -- | -- |
| 111.62 | 0.492 | 11.5 | -0.24 | 2.65 | -0.898 | -- | -- | -0.641 | 7.26 | 19.51 | 1233 | -- | -- |
| 442.76 | 0.98 | 11.5 | -0.189 | -- | -0.678 | -- | 1.65 | -0.461 | -- | 29.86 | 1433 | -- | -- |
| 134.77 | 0.544 | 11.5 | -0.13 | 2.49 | -- | 0.7 | -- | -0.446 | 6.95 | -- | -- | -- | -- |
| 136.04 | 0.546 | 11.5 | -0.117 | 2.49 | -- | -- | -- | -0.448 | 6.94 | -- | -- | -- | -- |
| 439.3 | 0.976 | 11.6 | -0.0706 | -- | -0.797 | -- | -- | -0.561 | -- | 19.98 | 1491 | -- | -- |
| 112.5 | 0.494 | 11.5 | -- | 2.64 | -0.883 | -- | -- | -0.621 | 7.26 | 19.74 | 1212 | -- | -- |
| 461.61 | 1 | 11.6 | -0.0656 | -- | -- | -- | -- | -0.402 | -- | -- | -- | -- | -- |
| 136.4 | 0.546 | 11.5 | -- | 2.49 | -- | -- | -- | -0.435 | 6.94 | -- | -- | -- | -- |
| 439.49 | 0.976 | 11.6 | -- | -- | -0.762 | -- | -- | -0.556 | -- | 19.97 | 1491 | -- | -- |
| 461.72 | 1 | 11.6 | -- | -- | -- | -- | -- | -0.394 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.24 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 4 | 103.32 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 6 | 104.22 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 7 | 104.32 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 10 | 104.50 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 11 | 104.53 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 14 | 104.58 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 10 | 7 |
| 16 | 104.79 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 5 |
| 19 | 105.04 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 20 | 105.05 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 32 | 105.11 | wind | 9.0 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 37 | 105.22 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 52 | 105.40 | radiation | 10.0 | 1440 | < th | dose independent | sin | 20 | NA |
| 54 | 105.40 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 15 |
| 83 | 105.49 | wind | 9.0 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 85 | 105.52 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 87 | 105.53 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 21 | 7 |
| 89 | 105.58 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 90 | 105.58 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 22 | 16 |
| 92 | 105.60 | wind | 9.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 97 | 105.61 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 104 | 105.63 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 21 | 4 |
| 121 | 105.70 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 2 | 12 |
| 126 | 105.71 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 22 | 16 |
| 132 | 105.73 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 13 |
| 139 | 105.78 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 145 | 105.81 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 7 |
| 146 | 105.81 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 149 | 105.83 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 9 |
| 151 | 105.84 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 153 | 105.85 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 171 | 105.90 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 180 | 105.91 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 9 |
| 185 | 105.91 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 203 | 105.93 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 210 | 105.95 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 223 | 105.99 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 228 | 106.01 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 2 | 8 |
| 232 | 106.03 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 237 | 106.04 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 239 | 106.06 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 249 | 106.11 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 251 | 106.12 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 260 | 106.14 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 265 | 106.15 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 276 | 106.17 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 278 | 106.19 | wind | 7.0 | 43200 | > th | dose independent | rect. | 21 | 13 |
| 282 | 106.20 | wind | 1.0 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 285 | 106.20 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 7 |
| 290 | 106.22 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 7 |
| 293 | 106.25 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 298 | 106.25 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 308 | 106.27 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 317 | 106.29 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 319 | 106.30 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 321 | 106.30 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 323 | 106.31 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 326 | 106.32 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 334 | 106.35 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 7 |
| 335 | 106.35 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 336 | 106.35 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 7 |
| 343 | 106.37 | wind | 7.0 | 43200 | > th | dose independent | rect. | 21 | 10 |
| 360 | 106.44 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 362 | 106.44 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 369 | 106.47 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 381 | 106.49 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 17 | 15 |
| 385 | 106.52 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 386 | 106.52 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 393 | 106.53 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 405 | 106.57 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 409 | 106.57 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 21 | 13 |
| 467 | 106.73 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 511 | 106.84 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 519 | 106.86 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 15 |
| 528 | 106.88 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 530 | 106.88 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 533 | 106.89 | wind | 7.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 549 | 106.90 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 12 |
| 552 | 106.91 | temperature | 20.0 | 43200 | > th | dose independent | sin | 0 | NA |
| 568 | 106.93 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 1 | 12 |
| 570 | 106.94 | wind | 1.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 577 | 106.94 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 15 |
| 591 | 106.96 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 1 | 9 |
| 597 | 106.97 | temperature | 20.0 | 43200 | < th | dose independent | sin | 0 | NA |
| 679 | 107.05 | atmosphere | 995.0 | 43200 | < th | dose dependent | no | NA | NA |
| 680 | 107.05 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 682 | 107.05 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 8 | 22 |
| 694 | 107.07 | wind | 7.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 707 | 107.07 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 709 | 107.07 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 743 | 107.09 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 744 | 107.09 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 12 | 23 |
| 802 | 107.14 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 805 | 107.15 | wind | 1.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 807 | 107.15 | wind | 7.0 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 840 | 107.18 | wind | 7.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 889 | 107.22 | wind | 1.0 | 43200 | > th | dose independent | rect. | 10 | 16 |
| 894 | 107.23 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 6 | NA |