BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0384000 Os08g0384000|J090052O10
         (142 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38630.1  | chr5:15466141-15467511 FORWARD LENGTH=231          125   6e-30
AT4G25570.1  | chr4:13053887-13055518 REVERSE LENGTH=240           87   2e-18
AT1G26100.1  | chr1:9022716-9024081 REVERSE LENGTH=237             66   7e-12
AT1G14730.1  | chr1:5073244-5074568 FORWARD LENGTH=225             65   1e-11

>AT5G38630.1 | chr5:15466141-15467511 FORWARD LENGTH=231
          Length = 230

 Score =  125 bits (315), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 62/133 (46%), Positives = 84/133 (63%), Gaps = 1/133 (0%)

Query: 1   MAAAPAARFPVFGIVRLLGLXXXXXXXXXXXHFRGGMALSSETDKLLIFNVHPVLMLIGL 60
           MA      FP+F +VR+LG            H+RGG+ALSS+ +K  IFNVHPV+M+IGL
Sbjct: 1   MAVPVLGGFPIFMVVRVLGFIIAALVLTWTVHYRGGLALSSD-NKDHIFNVHPVMMVIGL 59

Query: 61  VVLNGEAILAYKTVPGTKKLKKXXXXXXXXXXXXXXXIGLWTVWKFHDERQIDHLYTLHS 120
           ++ NGEA+LAYK+V GTK LKK               IG+W   KFH ++ I++ Y+LHS
Sbjct: 60  ILFNGEAMLAYKSVQGTKNLKKLVHLTLQLTAFILSLIGVWAALKFHIDKGIENFYSLHS 119

Query: 121 WLGLSCIIFFSLQ 133
           WLGL+C+  F+ Q
Sbjct: 120 WLGLACLFLFAFQ 132



>AT4G25570.1 | chr4:13053887-13055518 REVERSE LENGTH=240
          Length = 239

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 1/101 (0%)

Query: 33  FRGGMALSSETDKLLIFNVHPVLMLIGLVVLNGEAILAYKTVPGTKKLKKXXXXXXXXXX 92
           +RGG+A  + T+K LIFN+HPVLMLIG ++L GEAI++YK++P  K +KK          
Sbjct: 32  YRGGLAWEA-TNKNLIFNLHPVLMLIGFIILGGEAIISYKSLPLEKPVKKLIHLILHAIA 90

Query: 93  XXXXXIGLWTVWKFHDERQIDHLYTLHSWLGLSCIIFFSLQ 133
                 G+   +K H+E  I +LY+LHSW+G+  I  +  Q
Sbjct: 91  LALGIFGICAAFKNHNESHIPNLYSLHSWIGIGVISLYGFQ 131



>AT1G26100.1 | chr1:9022716-9024081 REVERSE LENGTH=237
          Length = 236

 Score = 65.9 bits (159), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 3/93 (3%)

Query: 50  NVHPVLMLIGLVVLNGEAILAYKTVPGTKKLKKXXXXXXXXXXXXXXXIGLWTVWKFHDE 109
            +HP+LM+IG ++++GEAIL ++ +PG++K KK                G+WT  KFH +
Sbjct: 42  TLHPLLMVIGFILVSGEAILIHRWLPGSRKTKKAVHLWLQGMALASAVFGIWT--KFHYQ 99

Query: 110 RQI-DHLYTLHSWLGLSCIIFFSLQVDIELCSF 141
           R +  + Y+LHSW+GL  +  F+ Q      SF
Sbjct: 100 RGVFANFYSLHSWMGLLSVSLFAAQWVTGFMSF 132



>AT1G14730.1 | chr1:5073244-5074568 FORWARD LENGTH=225
          Length = 224

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 1/102 (0%)

Query: 32  HFRGGMALSSETDKLLIFNVHPVLMLIGLVVLNGEAILAYKTVPGTKKLKKXXXXXXXXX 91
           H+R G+   S+ + L + NVHP LM  G + L G+A++ YKT   + +++K         
Sbjct: 38  HYREGIEYGSD-NPLKVLNVHPFLMYCGFLFLVGQAMMTYKTAYASHQVQKMVHGGLHLI 96

Query: 92  XXXXXXIGLWTVWKFHDERQIDHLYTLHSWLGLSCIIFFSLQ 133
                 +G+   ++FHD+  +  + +LHSW+GL+  I   +Q
Sbjct: 97  GLVLGIVGICAAFRFHDKVNLKDMVSLHSWIGLTTFILLGVQ 138



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.330    0.144    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,488,755
Number of extensions: 71960
Number of successful extensions: 157
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 4
Length of query: 142
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 53
Effective length of database: 8,666,545
Effective search space: 459326885
Effective search space used: 459326885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 106 (45.4 bits)