BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0478000 Os10g0478000|J100055D15
(204 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0478000 Protein of unknown function DUF640 domain cont... 214 3e-56
Os02g0623400 Protein of unknown function DUF640 domain cont... 210 7e-55
Os02g0811000 Protein of unknown function DUF640 domain cont... 210 7e-55
Os04g0516200 Protein of unknown function DUF640 domain cont... 201 3e-52
Os01g0828900 199 1e-51
Os06g0672400 Protein of unknown function DUF640 domain cont... 199 2e-51
Os02g0166800 Protein of unknown function DUF640 domain cont... 197 4e-51
Os05g0347400 Protein of unknown function DUF640 domain cont... 194 4e-50
Os05g0472000 193 8e-50
Os07g0139300 135 3e-32
>Os10g0478000 Protein of unknown function DUF640 domain containing protein
Length = 204
Score = 214 bits (546), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 113/164 (68%), Positives = 113/164 (68%)
Query: 1 MEFVAHAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYESQKRRDWNTFGQYLRNHR 60
MEFVAHAA RYESQKRRDWNTFGQYLRNHR
Sbjct: 1 MEFVAHAAAPDSPHSDSGGGGGGMATGATSASAAGASPSRYESQKRRDWNTFGQYLRNHR 60
Query: 61 PPLSLARCSGAHVLEFLRYLDQFGKTKVXXXXXXXXXXXXXXXXXXXXLRQAWGSLDALV 120
PPLSLARCSGAHVLEFLRYLDQFGKTKV LRQAWGSLDALV
Sbjct: 61 PPLSLARCSGAHVLEFLRYLDQFGKTKVHAPACPFFGHPAPPAPCPCPLRQAWGSLDALV 120
Query: 121 GRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARARGVSYE 164
GRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARARGVSYE
Sbjct: 121 GRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARARGVSYE 164
>Os02g0623400 Protein of unknown function DUF640 domain containing protein
Length = 232
Score = 210 bits (534), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 104/131 (79%), Positives = 108/131 (82%)
Query: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVXXXXXXXXXXX 99
RYE+QKRRDWNTFGQYLRNHRPPL LA+CSGAHVLEFLRYLDQFGKTKV
Sbjct: 73 RYEAQKRRDWNTFGQYLRNHRPPLGLAQCSGAHVLEFLRYLDQFGKTKVHTAACPFFGHP 132
Query: 100 XXXXXXXXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARAR 159
LRQAWGSLDALVGRLRAA+EENGGRPE+NPF RAVRLYLREVREHQARAR
Sbjct: 133 NPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAVRAVRLYLREVREHQARAR 192
Query: 160 GVSYEKKKRKK 170
GVSYEKKKRKK
Sbjct: 193 GVSYEKKKRKK 203
>Os02g0811000 Protein of unknown function DUF640 domain containing protein
Length = 248
Score = 210 bits (534), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 108/131 (82%)
Query: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVXXXXXXXXXXX 99
RYESQKRRDWNTFGQYLRNHRPPLSL+RCSGAHVLEFL+Y+DQFGKTKV
Sbjct: 80 RYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGHP 139
Query: 100 XXXXXXXXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARAR 159
LRQAWGSLDAL+GRLRAAYEENGG PE NPFGARAVRLYLREVRE QARAR
Sbjct: 140 NPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARAR 199
Query: 160 GVSYEKKKRKK 170
G+SYEKKKRKK
Sbjct: 200 GISYEKKKRKK 210
>Os04g0516200 Protein of unknown function DUF640 domain containing protein
Length = 202
Score = 201 bits (511), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 100/125 (80%), Positives = 104/125 (83%)
Query: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVXXXXXXXXXXX 99
RYE+QKRRDWNTFGQYLRNHRPPLSLA+CSGAHVLEFLRYLDQFGKTKV
Sbjct: 41 RYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLDQFGKTKVHTAACPFFGHP 100
Query: 100 XXXXXXXXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARAR 159
LRQAWGSLDALVGRLRAA+EENGGRPE+NPF ARAVRLYLREVREHQARAR
Sbjct: 101 SPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAARAVRLYLREVREHQARAR 160
Query: 160 GVSYE 164
GVSYE
Sbjct: 161 GVSYE 165
>Os01g0828900
Length = 212
Score = 199 bits (505), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 96/131 (73%), Positives = 106/131 (80%)
Query: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVXXXXXXXXXXX 99
RYESQKRRDWNTF QYLRNHRPPL+LARCSGAHV+EFLRYLDQFGKTKV
Sbjct: 31 RYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASGCAFYGQP 90
Query: 100 XXXXXXXXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARAR 159
LRQAWGSLDAL+GRLRAAYEE+GG PE+NPF ARAVR+YLREVR+ QA+AR
Sbjct: 91 SPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREVRDSQAKAR 150
Query: 160 GVSYEKKKRKK 170
G+ YEKKKRK+
Sbjct: 151 GIPYEKKKRKR 161
>Os06g0672400 Protein of unknown function DUF640 domain containing protein
Length = 277
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/131 (74%), Positives = 108/131 (82%)
Query: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVXXXXXXXXXXX 99
RYESQKRRDW+TFGQYLRNHRPPL L+RCSGAHVLEFLRYLDQFGKTKV
Sbjct: 22 RYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPFFGHP 81
Query: 100 XXXXXXXXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARAR 159
LRQAWGSLDALVGRLRAA+EE+GGRPE NPFGARAVRLYLREVR+ QA+AR
Sbjct: 82 SPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQAKAR 141
Query: 160 GVSYEKKKRKK 170
G++YEKK+RK+
Sbjct: 142 GIAYEKKRRKR 152
>Os02g0166800 Protein of unknown function DUF640 domain containing protein
Length = 191
Score = 197 bits (501), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/131 (72%), Positives = 108/131 (82%)
Query: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVXXXXXXXXXXX 99
RYESQKRRDW TFGQYLRNHRPPL L+RCSGAHVLEFLRYLDQFGKTKV
Sbjct: 23 RYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAHGCPFFGHP 82
Query: 100 XXXXXXXXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARAR 159
LRQAWGSLDALVGRLRAA+EE+GGRPE+NPFGARAVRLYLR++R+ Q++AR
Sbjct: 83 SPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAVRLYLRDIRDTQSKAR 142
Query: 160 GVSYEKKKRKK 170
G++YEKK+RK+
Sbjct: 143 GIAYEKKRRKR 153
>Os05g0347400 Protein of unknown function DUF640 domain containing protein
Length = 284
Score = 194 bits (493), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 92/130 (70%), Positives = 105/130 (80%)
Query: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVXXXXXXXXXXX 99
RYESQKRRDWNTF QYLRNH+PPL+L RCSGAHV+EFL+YLDQFGKTKV
Sbjct: 67 RYESQKRRDWNTFLQYLRNHKPPLTLPRCSGAHVIEFLKYLDQFGKTKVHADGCAYFGEP 126
Query: 100 XXXXXXXXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARAR 159
LRQAWGSLDAL+GRLRAAYEE+GGRPE+NPF ARAVR+YLREVRE QA+AR
Sbjct: 127 NPPAPCACPLRQAWGSLDALIGRLRAAYEESGGRPESNPFAARAVRIYLREVREAQAKAR 186
Query: 160 GVSYEKKKRK 169
G+ YEKK+++
Sbjct: 187 GIPYEKKRKR 196
>Os05g0472000
Length = 238
Score = 193 bits (490), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 93/131 (70%), Positives = 105/131 (80%)
Query: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVXXXXXXXXXXX 99
RYESQKRRDWNTF QYL+NHRPPL+LARCSGAHV+EFL+YLDQFGKTKV
Sbjct: 30 RYESQKRRDWNTFLQYLKNHRPPLTLARCSGAHVIEFLKYLDQFGKTKVHASGCAYYGQP 89
Query: 100 XXXXXXXXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARAR 159
LRQAWGSLDAL+GRLRAAYEE+G PE+NPF ARAVR+YLREVR+ QA+AR
Sbjct: 90 SPPAPCPCPLRQAWGSLDALIGRLRAAYEESGHAPESNPFAARAVRIYLREVRDAQAKAR 149
Query: 160 GVSYEKKKRKK 170
G+ YEKKKRK+
Sbjct: 150 GIPYEKKKRKR 160
>Os07g0139300
Length = 293
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/163 (53%), Positives = 98/163 (60%), Gaps = 32/163 (19%)
Query: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVXX--------- 90
RYESQKRRDW TF QYL HRPPL L RCSGAHVLEFLRYLD+FGKT+V
Sbjct: 41 RYESQKRRDWQTFTQYLAAHRPPLELRRCSGAHVLEFLRYLDRFGKTRVHEPPCPSYGGR 100
Query: 91 XXXXXXXXXXXXXXXXXXLRQAWGSLDALVGRLRAAYEENGGR---PE------------ 135
LRQAWGSLDALVGRLRAAY+E GR P+
Sbjct: 101 SPSAAGPVAAAAAACQCPLRQAWGSLDALVGRLRAAYDERHGRAGEPDAVAGAGAVATDS 160
Query: 136 --------NNPFGARAVRLYLREVREHQARARGVSYEKKKRKK 170
NPF ARAVRLYLR+VR+ QA ARG+SY KKK+++
Sbjct: 161 TSSSSAAAANPFAARAVRLYLRDVRDAQAMARGISYHKKKKRR 203
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,348,815
Number of extensions: 131268
Number of successful extensions: 262
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 11
Length of query: 204
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,023,257
Effective search space: 1298511756
Effective search space used: 1298511756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)