FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0623400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF640 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.58 (0.0456) R2 : 0.653
β1 : -3.31 (0.172) R2dD : 0.31 R2D : 0.274
β2 : 1.94 (0.114) R2dC : 0.222 R2C : 0.195
β3 : 1.79 (0.169) R2dE : 0.0915 R2E : 0.00441
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.849 (0.0977) R2dN8 : 0.0774 R2N8 : 0.122
σ : 0.85
deviance : 333.22
__
_____
C
peak time of C : 20.7
E
wheather : radiation
threshold : 19.88
memory length : 4308
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 3.88
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
308.42 0.825 4.58 -3.41 1.92 1.68 -2.36 -2.15 0.835 20.3 19.94 4318 4.04 --
316.65 0.829 4.57 -3.34 1.89 1.7 -2.35 -- 0.814 20.1 19.89 4346 3.89 --
324.42 0.839 4.58 -3.3 1.94 1.76 -- -2.09 0.843 20.7 19.89 4307 4.11 --
333.22 0.85 4.58 -3.31 1.94 1.79 -- -- 0.849 20.7 19.88 4308 3.88 --
521.46 1.06 4.56 -3.27 -- 1.88 -- -2.19 0.799 -- 19.51 4355 4.18 --
395.42 0.932 4.51 -2.87 1.91 -- -2.38 -- 1.02 20.2 -- -- -- --
411.88 0.95 4.51 -2.8 1.91 -- -- -- 1.01 20.4 -- -- -- --
517.26 1.06 4.46 -3.42 -- 2.39 -- -- 0.866 -- 19.63 4375 4.83 --
558.31 1.1 4.51 -- 2.2 1.61 -- -- 1.45 20.4 20.48 5755 3.03 --
614.83 1.16 4.46 -2.81 -- -- -- -- 0.996 -- -- -- -- --
619.16 1.16 4.44 -- 1.92 -- -- -- 1.33 20.3 -- -- -- --
748.04 1.27 4.32 -- -- 1.68 -- -- 1.59 -- 20.34 5767 3.12 --
823.77 1.34 4.39 -- -- -- -- -- 1.31 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 291.75 radiation 10.0 14400 > th dose independent rect. 6 1
14 292.41 humidity 90.0 43200 < th dose dependent rect. 11 1
15 295.53 wind 1.0 43200 < th dose dependent rect. 4 3
18 296.24 humidity 90.0 43200 < th dose dependent rect. 8 7
19 296.35 humidity 90.0 43200 < th dose dependent rect. 9 4
26 296.68 humidity 50.0 43200 > th dose dependent rect. 2 13
27 296.77 wind 1.0 43200 > th dose independent rect. 4 2
30 296.88 humidity 70.0 43200 > th dose independent rect. 1 15
49 298.04 humidity 50.0 43200 > th dose dependent sin 4 NA
51 298.24 humidity 90.0 43200 < th dose dependent rect. 2 13
65 298.54 wind 9.0 43200 < th dose dependent rect. 4 1
91 299.06 radiation 20.0 4320 < th dose independent rect. 8 1
99 299.25 wind 1.0 43200 < th dose independent rect. 4 3
100 299.25 radiation 20.0 4320 < th dose independent rect. 17 16
102 299.29 radiation 20.0 4320 < th dose independent rect. 23 10
103 299.30 radiation 20.0 4320 < th dose independent rect. 5 4
105 299.31 radiation 20.0 4320 < th dose independent rect. 3 6
106 299.32 radiation 20.0 4320 < th dose independent rect. 1 8
114 299.37 humidity 90.0 43200 < th dose dependent sin 3 NA
116 299.42 wind 3.0 43200 > th dose independent rect. 14 1
118 299.43 humidity 50.0 43200 > th dose dependent rect. 8 21
149 299.87 humidity 70.0 43200 < th dose independent rect. 24 16
162 300.02 wind 1.0 43200 < th dose dependent rect. 10 15
165 300.08 wind 3.0 43200 > th dose independent rect. 16 1
169 300.15 humidity 70.0 43200 > th dose independent rect. 9 21
183 300.30 temperature 25.0 43200 < th dose dependent rect. 8 2
190 300.36 wind 3.0 43200 < th dose independent rect. 14 1
212 300.62 humidity 70.0 43200 > th dose independent sin 4 NA
213 300.63 humidity 50.0 43200 > th dose dependent rect. 19 22
256 301.02 humidity 90.0 43200 < th dose dependent rect. 8 20
275 301.14 humidity 50.0 43200 > th dose dependent rect. 2 23
280 301.17 humidity 50.0 43200 > th dose dependent no NA NA
284 301.21 humidity 70.0 43200 > th dose independent rect. 17 23
295 301.29 wind 1.0 43200 > th dose dependent rect. 4 1
300 301.33 wind 3.0 43200 < th dose independent rect. 16 1
352 301.63 humidity 50.0 43200 > th dose dependent rect. 13 23
356 301.66 humidity 70.0 43200 > th dose independent rect. 13 23
371 301.76 temperature 25.0 43200 > th dose independent rect. 12 1
402 301.93 humidity 70.0 43200 > th dose independent no NA NA
437 302.15 temperature 25.0 43200 < th dose independent rect. 12 1
438 302.15 humidity 70.0 43200 > th dose independent rect. 4 23
464 302.25 humidity 70.0 43200 < th dose independent rect. 10 20
480 302.33 humidity 50.0 43200 > th dose dependent rect. 11 23
512 302.48 wind 5.0 43200 < th dose dependent rect. 16 1
564 302.70 humidity 90.0 43200 < th dose dependent no NA NA
586 302.80 humidity 80.0 43200 < th dose independent rect. 3 9
591 302.82 precipitation 0.1 43200 > th dose independent rect. 7 3
592 302.83 precipitation 0.1 43200 > th dose dependent rect. 7 3
601 302.86 precipitation 0.1 43200 < th dose independent rect. 7 3
604 302.86 precipitation 0.1 43200 < th dose dependent rect. 7 3
628 303.00 wind 3.0 43200 > th dose independent rect. 13 4
634 303.03 precipitation 0.1 43200 < th dose independent rect. 5 8
636 303.03 precipitation 0.1 43200 < th dose dependent rect. 5 8
647 303.09 precipitation 0.1 43200 > th dose dependent rect. 5 8
654 303.13 radiation 10.0 43200 > th dose independent rect. 8 2
656 303.14 humidity 70.0 43200 > th dose independent rect. 17 19
667 303.17 precipitation 0.1 43200 > th dose independent rect. 5 8
691 303.28 humidity 90.0 43200 > th dose dependent rect. 9 7
703 303.33 humidity 90.0 43200 < th dose dependent rect. 13 23
717 303.40 humidity 90.0 43200 > th dose dependent rect. 9 5
728 303.45 precipitation 0.1 43200 > th dose dependent rect. 5 6
730 303.46 radiation 10.0 43200 > th dose independent rect. 13 1
731 303.47 precipitation 0.1 43200 < th dose independent rect. 5 6
735 303.47 precipitation 0.1 43200 < th dose dependent rect. 5 6
737 303.47 humidity 90.0 43200 < th dose dependent rect. 11 23
761 303.57 wind 1.0 43200 < th dose dependent sin 18 NA
766 303.59 humidity 70.0 43200 < th dose independent rect. 17 23
776 303.63 wind 3.0 43200 < th dose independent rect. 13 4
789 303.68 radiation 10.0 43200 > th dose independent rect. 6 8
831 303.81 wind 1.0 43200 > th dose independent rect. 10 1
841 303.86 humidity 70.0 43200 < th dose independent rect. 13 23
851 303.89 humidity 50.0 43200 > th dose dependent rect. 8 1
872 303.96 humidity 70.0 43200 > th dose independent sin 18 NA
894 304.05 wind 1.0 43200 > th dose independent rect. 11 14
898 304.06 humidity 70.0 43200 < th dose independent sin 4 NA
939 304.22 wind 5.0 43200 > th dose independent rect. 3 6
974 304.34 humidity 70.0 43200 < th dose independent no NA NA
983 304.38 radiation 10.0 43200 > th dose independent rect. 7 4
984 304.38 wind 5.0 43200 < th dose dependent rect. 14 3
1000 304.43 humidity 70.0 43200 > th dose independent rect. 10 1