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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0166800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF640 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.82 (0.0295) R2 : 0.0129
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.151 (0.062) R2dN8 : 0.0166 R2N8 : 0.0129
σ : 0.555
deviance : 141.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
134.51 0.545 2.78 0.0515 0.143 0.424 -0.394 0.852 0.261 8.62 61.49 6770 -- --
134.89 0.541 2.79 0.145 0.168 0.401 -0.336 -- 0.271 8.81 59.5 16064 -- --
134.98 0.541 2.78 0.0457 0.15 0.424 -- 0.763 0.264 8.19 62.21 6811 -- --
135.24 0.542 2.79 0.135 0.172 0.401 -- -- 0.272 8.71 59.94 16062 -- --
136.04 0.543 2.78 0.053 -- 0.443 -- 0.685 0.283 -- 63.58 6541 -- --
138.28 0.551 2.81 0.193 0.174 -- -0.316 -- 0.17 8.85 -- -- -- --
138.61 0.551 2.81 0.182 0.175 -- -- -- 0.17 8.79 -- -- -- --
136.6 0.544 2.79 0.136 -- 0.414 -- -- 0.288 -- 59.65 16576 -- --
135.6 0.542 2.79 -- 0.157 0.461 -- -- 0.263 8.64 30.56 16096 -- --
140.35 0.554 2.82 0.182 -- -- -- -- 0.171 -- -- -- -- --
139.48 0.552 2.82 -- 0.175 -- -- -- 0.15 8.71 -- -- -- --
136.95 0.545 2.79 -- -- 0.477 -- -- 0.27 -- 29.01 16539 -- --
141.22 0.555 2.82 -- -- -- -- -- 0.151 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 122.01 radiation 10.0 10 < th dose dependent rect. 10 1
3 122.04 radiation 10.0 10 < th dose independent rect. 9 1
9 122.85 wind 1.0 10 < th dose dependent rect. 9 1
12 123.23 wind 1.0 30 < th dose independent rect. 9 1
36 126.30 precipitation 0.1 720 > th dose dependent rect. 5 1
40 127.28 precipitation 0.1 720 > th dose independent rect. 5 1
52 129.62 humidity 80.0 30 > th dose independent rect. 8 4
55 129.72 temperature 25.0 90 > th dose independent rect. 3 4
59 130.13 wind 1.0 270 < th dose dependent rect. 9 1
60 130.22 temperature 25.0 30 > th dose dependent rect. 4 3
63 130.54 temperature 25.0 1440 < th dose independent rect. 4 1
64 130.55 temperature 25.0 30 > th dose dependent rect. 6 1
69 130.66 atmosphere 1010.0 30 < th dose independent rect. 6 1
75 130.78 radiation 10.0 30 < th dose independent rect. 6 1
76 130.78 humidity 80.0 10 > th dose dependent rect. 10 1
79 130.80 wind 1.0 270 < th dose independent rect. 9 1
88 130.99 atmosphere 1010.0 30 < th dose dependent rect. 6 1
97 131.13 precipitation 0.1 4320 < th dose independent rect. 15 1
99 131.13 precipitation 0.1 4320 < th dose dependent rect. 15 1
100 131.14 precipitation 0.1 4320 > th dose independent rect. 15 1
101 131.14 precipitation 0.1 4320 > th dose dependent rect. 15 1
126 131.54 humidity 80.0 30 > th dose independent rect. 6 6
134 131.68 humidity 70.0 10 > th dose dependent rect. 9 3
154 132.04 wind 3.0 30 > th dose independent rect. 6 1
171 132.35 wind 1.0 4320 > th dose independent rect. 17 1
172 132.36 precipitation 0.1 720 > th dose independent rect. 5 8
182 132.42 wind 1.0 30 > th dose dependent rect. 6 1
187 132.45 temperature 25.0 1440 > th dose dependent rect. 4 2
201 132.59 humidity 90.0 4320 > th dose dependent rect. 15 1
233 132.93 humidity 90.0 30 < th dose dependent rect. 6 1
279 133.20 precipitation 0.1 1440 < th dose independent rect. 5 1
283 133.20 precipitation 0.1 1440 < th dose dependent rect. 5 1
288 133.25 radiation 1.0 10 > th dose dependent rect. 6 1
331 133.50 radiation 20.0 30 < th dose dependent rect. 6 1
342 133.59 humidity 80.0 30 > th dose independent rect. 6 18
350 133.66 humidity 90.0 4320 > th dose independent rect. 16 1
356 133.74 wind 1.0 43200 > th dose independent rect. 1 1
362 133.77 humidity 80.0 30 > th dose independent rect. 6 23
364 133.77 humidity 70.0 10 > th dose dependent rect. 6 7
378 133.87 humidity 80.0 30 > th dose independent rect. 8 16
394 133.96 wind 1.0 43200 < th dose independent rect. 1 1
395 133.96 wind 1.0 43200 > th dose dependent rect. 5 2
400 133.97 wind 3.0 43200 > th dose independent rect. 5 2
401 133.97 wind 3.0 43200 < th dose independent rect. 5 2
408 133.99 wind 1.0 30 < th dose independent rect. 6 1
411 134.00 humidity 70.0 14400 > th dose independent rect. 17 1
420 134.02 wind 9.0 43200 < th dose dependent rect. 5 2
424 134.03 humidity 70.0 14400 > th dose independent rect. 17 16
430 134.04 wind 3.0 43200 < th dose independent rect. 24 8
448 134.10 wind 3.0 43200 > th dose independent rect. 24 8
461 134.12 wind 3.0 43200 < th dose dependent rect. 24 7
479 134.16 humidity 80.0 30 > th dose independent rect. 6 12
500 134.20 humidity 70.0 14400 < th dose independent rect. 17 1
511 134.22 humidity 70.0 14400 < th dose independent rect. 17 16
513 134.22 wind 1.0 14400 < th dose dependent rect. 4 1
535 134.24 radiation 20.0 10 < th dose dependent rect. 6 5
553 134.26 radiation 1.0 10 > th dose independent rect. 6 1
562 134.27 humidity 80.0 30 > th dose independent rect. 17 19
570 134.28 humidity 60.0 14400 > th dose independent rect. 13 3
575 134.28 humidity 70.0 14400 > th dose independent rect. 17 8
577 134.28 humidity 70.0 14400 > th dose independent rect. 17 13
602 134.31 humidity 80.0 30 < th dose independent sin 0 NA
607 134.32 humidity 80.0 14400 > th dose independent rect. 8 3
616 134.33 humidity 70.0 14400 > th dose independent sin 11 NA
620 134.34 wind 5.0 30 < th dose independent rect. 6 1
623 134.34 temperature 10.0 30 > th dose independent rect. 6 1
625 134.34 temperature 30.0 30 < th dose independent rect. 6 1
626 134.34 humidity 50.0 30 > th dose independent rect. 6 1
630 134.34 atmosphere 995.0 30 > th dose independent rect. 6 1
635 134.34 precipitation 0.1 30 < th dose independent rect. 6 1
638 134.34 temperature 10.0 30 > th dose independent rect. 7 23
639 134.34 precipitation 0.1 30 < th dose dependent rect. 6 1
646 134.35 atmosphere 1005.0 30 > th dose independent rect. 6 1
653 134.35 temperature 25.0 720 < th dose independent rect. 23 9
666 134.36 humidity 80.0 14400 < th dose independent rect. 8 3
676 134.37 wind 3.0 43200 < th dose independent rect. 24 4
679 134.37 humidity 70.0 14400 > th dose dependent rect. 9 1
680 134.38 wind 9.0 1440 < th dose independent rect. 7 1
681 134.38 temperature 10.0 1440 > th dose independent rect. 7 1
685 134.38 temperature 30.0 1440 < th dose independent rect. 7 1
689 134.38 humidity 50.0 1440 > th dose independent rect. 7 1
694 134.38 atmosphere 995.0 1440 > th dose independent rect. 7 1
695 134.38 atmosphere 1015.0 1440 < th dose independent rect. 7 1
701 134.38 temperature 10.0 1440 > th dose independent rect. 8 23
708 134.39 humidity 60.0 14400 < th dose independent rect. 13 2
713 134.39 wind 3.0 43200 < th dose dependent rect. 24 4
719 134.40 humidity 90.0 30 < th dose independent rect. 6 1
723 134.40 humidity 60.0 14400 < th dose independent rect. 12 4
726 134.41 humidity 70.0 14400 < th dose independent sin 11 NA
747 134.41 humidity 80.0 30 < th dose independent rect. 13 23
802 134.45 humidity 60.0 14400 > th dose dependent rect. 7 12
826 134.46 humidity 60.0 14400 > th dose independent rect. 12 13
829 134.46 humidity 60.0 14400 > th dose independent rect. 12 18
898 134.49 precipitation 0.1 14400 < th dose independent rect. 17 1
904 134.49 precipitation 0.1 14400 < th dose dependent rect. 17 1
928 134.50 wind 1.0 43200 > th dose dependent rect. 24 8
940 134.51 precipitation 0.1 14400 > th dose independent rect. 17 1
943 134.51 humidity 80.0 30 < th dose independent rect. 5 14
958 134.51 humidity 90.0 4320 > th dose dependent rect. 6 12
997 134.52 humidity 50.0 14400 > th dose dependent sin 23 NA