BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0166800 Os02g0166800|AK106854
(191 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0166800 Protein of unknown function DUF640 domain cont... 274 3e-74
Os06g0672400 Protein of unknown function DUF640 domain cont... 212 1e-55
Os10g0478000 Protein of unknown function DUF640 domain cont... 197 4e-51
Os04g0516200 Protein of unknown function DUF640 domain cont... 196 1e-50
Os01g0828900 194 3e-50
Os02g0811000 Protein of unknown function DUF640 domain cont... 192 1e-49
Os02g0623400 Protein of unknown function DUF640 domain cont... 192 1e-49
Os05g0347400 Protein of unknown function DUF640 domain cont... 191 2e-49
Os05g0472000 190 5e-49
Os07g0139300 142 2e-34
>Os02g0166800 Protein of unknown function DUF640 domain containing protein
Length = 191
Score = 274 bits (701), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 141/191 (73%), Positives = 141/191 (73%)
Query: 1 MDMIGMASPAESPGGGGTARPSRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFL 60
MDMIGMASPAESPGGGGTARPSRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFL
Sbjct: 1 MDMIGMASPAESPGGGGTARPSRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFL 60
Query: 61 RYLDQFGKTKVHAHGXXXXXXXXXXXXXXXXLRQAWGSLDALVGRLRAAFEEHGGRPESN 120
RYLDQFGKTKVHAHG LRQAWGSLDALVGRLRAAFEEHGGRPESN
Sbjct: 61 RYLDQFGKTKVHAHGCPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPESN 120
Query: 121 PFGARAVRLYLRDIRDTQSKARGIAYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
PFGARAVRLYLRDIRDTQSKARGIAYE
Sbjct: 121 PFGARAVRLYLRDIRDTQSKARGIAYEKKRRKRAAASHTKQKQQQQQLVEQAAAAAEAHA 180
Query: 181 XGCMMPLSVFN 191
GCMMPLSVFN
Sbjct: 181 AGCMMPLSVFN 191
>Os06g0672400 Protein of unknown function DUF640 domain containing protein
Length = 277
Score = 212 bits (540), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 105/128 (82%), Positives = 110/128 (85%)
Query: 20 RPSRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAHGXXXX 79
RPSRYESQKRRDW TFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHA G
Sbjct: 19 RPSRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPFF 78
Query: 80 XXXXXXXXXXXXLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAVRLYLRDIRDTQS 139
LRQAWGSLDALVGRLRAAFEEHGGRPE+NPFGARAVRLYLR++RD+Q+
Sbjct: 79 GHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQA 138
Query: 140 KARGIAYE 147
KARGIAYE
Sbjct: 139 KARGIAYE 146
>Os10g0478000 Protein of unknown function DUF640 domain containing protein
Length = 204
Score = 197 bits (501), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 106/127 (83%)
Query: 21 PSRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAHGXXXXX 80
PSRYESQKRRDW TFGQYLRNHRPPL L+RCSGAHVLEFLRYLDQFGKTKVHA
Sbjct: 38 PSRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVHAPACPFFG 97
Query: 81 XXXXXXXXXXXLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAVRLYLRDIRDTQSK 140
LRQAWGSLDALVGRLRAA+EE+GGRPE+NPFGARAVRLYLR++R+ Q++
Sbjct: 98 HPAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQAR 157
Query: 141 ARGIAYE 147
ARG++YE
Sbjct: 158 ARGVSYE 164
>Os04g0516200 Protein of unknown function DUF640 domain containing protein
Length = 202
Score = 196 bits (497), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/134 (70%), Positives = 106/134 (79%)
Query: 14 GGGGTARPSRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHA 73
G G PSRYE+QKRRDW TFGQYLRNHRPPL L++CSGAHVLEFLRYLDQFGKTKVH
Sbjct: 32 GAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLDQFGKTKVHT 91
Query: 74 HGXXXXXXXXXXXXXXXXLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAVRLYLRD 133
LRQAWGSLDALVGRLRAAFEE+GGRPESNPF ARAVRLYLR+
Sbjct: 92 AACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAARAVRLYLRE 151
Query: 134 IRDTQSKARGIAYE 147
+R+ Q++ARG++YE
Sbjct: 152 VREHQARARGVSYE 165
>Os01g0828900
Length = 212
Score = 194 bits (493), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 93/126 (73%), Positives = 102/126 (80%)
Query: 22 SRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAHGXXXXXX 81
SRYESQKRRDW TF QYLRNHRPPL L+RCSGAHV+EFLRYLDQFGKTKVHA G
Sbjct: 30 SRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASGCAFYGQ 89
Query: 82 XXXXXXXXXXLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAVRLYLRDIRDTQSKA 141
LRQAWGSLDAL+GRLRAA+EE GG PESNPF ARAVR+YLR++RD+Q+KA
Sbjct: 90 PSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREVRDSQAKA 149
Query: 142 RGIAYE 147
RGI YE
Sbjct: 150 RGIPYE 155
>Os02g0811000 Protein of unknown function DUF640 domain containing protein
Length = 248
Score = 192 bits (489), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 92/126 (73%), Positives = 103/126 (81%)
Query: 22 SRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAHGXXXXXX 81
SRYESQKRRDW TFGQYLRNHRPPL LSRCSGAHVLEFL+Y+DQFGKTKVH
Sbjct: 79 SRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGH 138
Query: 82 XXXXXXXXXXLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAVRLYLRDIRDTQSKA 141
LRQAWGSLDAL+GRLRAA+EE+GG PE NPFGARAVRLYLR++R+TQ++A
Sbjct: 139 PNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARA 198
Query: 142 RGIAYE 147
RGI+YE
Sbjct: 199 RGISYE 204
>Os02g0623400 Protein of unknown function DUF640 domain containing protein
Length = 232
Score = 192 bits (488), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 103/127 (81%)
Query: 21 PSRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAHGXXXXX 80
PSRYE+QKRRDW TFGQYLRNHRPPL L++CSGAHVLEFLRYLDQFGKTKVH
Sbjct: 71 PSRYEAQKRRDWNTFGQYLRNHRPPLGLAQCSGAHVLEFLRYLDQFGKTKVHTAACPFFG 130
Query: 81 XXXXXXXXXXXLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAVRLYLRDIRDTQSK 140
LRQAWGSLDALVGRLRAAFEE+GGRPESNPF RAVRLYLR++R+ Q++
Sbjct: 131 HPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAVRAVRLYLREVREHQAR 190
Query: 141 ARGIAYE 147
ARG++YE
Sbjct: 191 ARGVSYE 197
>Os05g0347400 Protein of unknown function DUF640 domain containing protein
Length = 284
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/126 (72%), Positives = 101/126 (80%)
Query: 22 SRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAHGXXXXXX 81
SRYESQKRRDW TF QYLRNH+PPL L RCSGAHV+EFL+YLDQFGKTKVHA G
Sbjct: 66 SRYESQKRRDWNTFLQYLRNHKPPLTLPRCSGAHVIEFLKYLDQFGKTKVHADGCAYFGE 125
Query: 82 XXXXXXXXXXLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAVRLYLRDIRDTQSKA 141
LRQAWGSLDAL+GRLRAA+EE GGRPESNPF ARAVR+YLR++R+ Q+KA
Sbjct: 126 PNPPAPCACPLRQAWGSLDALIGRLRAAYEESGGRPESNPFAARAVRIYLREVREAQAKA 185
Query: 142 RGIAYE 147
RGI YE
Sbjct: 186 RGIPYE 191
>Os05g0472000
Length = 238
Score = 190 bits (483), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 94/144 (65%), Positives = 106/144 (73%), Gaps = 4/144 (2%)
Query: 4 IGMASPAESPGGGGTARPSRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYL 63
+ A PA P + SRYESQKRRDW TF QYL+NHRPPL L+RCSGAHV+EFL+YL
Sbjct: 15 VAQAPPAMQP----MQQLSRYESQKRRDWNTFLQYLKNHRPPLTLARCSGAHVIEFLKYL 70
Query: 64 DQFGKTKVHAHGXXXXXXXXXXXXXXXXLRQAWGSLDALVGRLRAAFEEHGGRPESNPFG 123
DQFGKTKVHA G LRQAWGSLDAL+GRLRAA+EE G PESNPF
Sbjct: 71 DQFGKTKVHASGCAYYGQPSPPAPCPCPLRQAWGSLDALIGRLRAAYEESGHAPESNPFA 130
Query: 124 ARAVRLYLRDIRDTQSKARGIAYE 147
ARAVR+YLR++RD Q+KARGI YE
Sbjct: 131 ARAVRIYLREVRDAQAKARGIPYE 154
>Os07g0139300
Length = 293
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 106/172 (61%), Gaps = 39/172 (22%)
Query: 7 ASPAESPGGGGTARPSRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQF 66
SPAE RPSRYESQKRRDWQTF QYL HRPPLEL RCSGAHVLEFLRYLD+F
Sbjct: 32 CSPAE-------LRPSRYESQKRRDWQTFTQYLAAHRPPLELRRCSGAHVLEFLRYLDRF 84
Query: 67 GKTKVH-----AHG----XXXXXXXXXXXXXXXXLRQAWGSLDALVGRLRAAFEEHGGR- 116
GKT+VH ++G LRQAWGSLDALVGRLRAA++E GR
Sbjct: 85 GKTRVHEPPCPSYGGRSPSAAGPVAAAAAACQCPLRQAWGSLDALVGRLRAAYDERHGRA 144
Query: 117 --PE--------------------SNPFGARAVRLYLRDIRDTQSKARGIAY 146
P+ +NPF ARAVRLYLRD+RD Q+ ARGI+Y
Sbjct: 145 GEPDAVAGAGAVATDSTSSSSAAAANPFAARAVRLYLRDVRDAQAMARGISY 196
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,567,044
Number of extensions: 202905
Number of successful extensions: 650
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 638
Number of HSP's successfully gapped: 10
Length of query: 191
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 96
Effective length of database: 12,075,471
Effective search space: 1159245216
Effective search space used: 1159245216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)