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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0811000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF640 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.83 (0.0252) R2 : 0.216
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.36 (0.477) R2dE : 0.217 R2E : 0.216
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0171 (0.0531) R2dN8 : 0.000229 R2N8 : -0.000134
σ : 0.474
deviance : 103.59
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.44
memory length : 101
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.99
open length of G : 0.197

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
101.74 0.47 2.82 0.107 0.167 2.09 0.0117 -7.19 0.027 6.28 18.06 55 2.23 0.85
102.62 0.472 2.85 0.17 0.164 4.78 0.0202 -- 0.00851 7.07 18.55 52 3.06 0.213
101.74 0.47 2.82 0.108 0.166 2.13 -- -7.06 0.0276 6.2 18.11 62 2.27 0.839
101.74 0.47 2.82 0.123 0.166 5.35 -- -- 0.0275 6.2 18.51 88 3.04 0.0337
103.16 0.473 2.82 0.114 -- 2.25 -- -6.96 0.0316 -- 18.21 78 2.28 0.865
128.97 0.532 2.83 0.0189 0.203 -- -0.651 -- -0.00315 4.65 -- -- -- --
129.88 0.534 2.83 0.0235 0.211 -- -- -- 0.000415 5.72 -- -- -- --
103.16 0.473 2.83 0.129 -- 5.42 -- -- 0.0315 -- 18.49 102 3.03 0.0697
102.13 0.471 2.83 -- 0.168 5.29 -- -- 0.0136 6.15 18.5 92 3.03 0.104
132.19 0.537 2.83 0.0301 -- -- -- -- 0.00541 -- -- -- -- --
129.9 0.533 2.83 -- 0.211 -- -- -- -0.0022 5.71 -- -- -- --
103.59 0.474 2.83 -- -- 5.36 -- -- 0.0171 -- 18.44 101 2.99 0.197
132.21 0.537 2.83 -- -- -- -- -- 0.00207 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.48 temperature 20.0 90 < th dose dependent rect. 2 1
2 110.12 humidity 90.0 270 > th dose dependent rect. 24 1
3 110.42 humidity 90.0 30 > th dose dependent rect. 24 4
6 110.80 atmosphere 1005.0 90 < th dose independent rect. 1 3
13 111.84 atmosphere 1005.0 10 < th dose independent rect. 1 4
17 111.89 wind 1.0 90 < th dose dependent rect. 24 1
21 112.13 humidity 90.0 270 > th dose independent rect. 24 1
27 112.66 humidity 90.0 90 > th dose independent rect. 1 3
33 113.60 wind 3.0 30 > th dose independent rect. 3 1
38 114.15 wind 1.0 30 > th dose dependent rect. 2 2
49 114.84 atmosphere 1010.0 30 < th dose dependent rect. 1 3
53 115.16 wind 1.0 90 < th dose independent rect. 24 1
72 115.76 atmosphere 1005.0 90 < th dose independent rect. 2 1
82 116.09 temperature 20.0 90 < th dose independent rect. 2 1
101 116.34 humidity 90.0 30 > th dose independent rect. 3 1
140 117.46 humidity 90.0 30 > th dose dependent rect. 3 1
157 117.73 temperature 25.0 270 < th dose dependent rect. 24 1
170 118.00 humidity 60.0 90 < th dose dependent rect. 9 1
192 118.06 atmosphere 1010.0 270 < th dose dependent rect. 24 1
208 118.25 humidity 60.0 90 < th dose independent rect. 9 1
316 119.39 temperature 20.0 720 < th dose independent rect. 16 1
431 120.13 temperature 25.0 270 < th dose independent rect. 24 1
449 120.22 wind 5.0 720 > th dose independent rect. 23 4
450 120.23 wind 3.0 720 > th dose dependent rect. 24 3
451 120.24 wind 5.0 720 > th dose independent rect. 22 6
457 120.28 temperature 20.0 720 < th dose dependent rect. 16 1
464 120.33 wind 5.0 720 > th dose dependent rect. 22 6
467 120.34 wind 5.0 720 > th dose independent rect. 1 2
481 120.35 humidity 90.0 10 > th dose dependent rect. 1 19
527 120.54 wind 1.0 90 > th dose independent rect. 4 22
553 120.67 atmosphere 1000.0 30 > th dose independent rect. 4 23
622 120.85 atmosphere 1005.0 90 < th dose independent rect. 19 9
629 120.87 atmosphere 1005.0 10 < th dose independent rect. 18 11
636 120.90 humidity 90.0 270 > th dose dependent sin 14 NA
654 120.95 wind 9.0 1440 < th dose independent rect. 4 1
655 120.95 temperature 10.0 1440 > th dose independent rect. 4 1
658 120.95 temperature 30.0 1440 < th dose independent rect. 4 1
662 120.95 humidity 50.0 1440 > th dose independent rect. 4 1
671 120.95 atmosphere 995.0 1440 > th dose independent rect. 4 1
672 120.95 atmosphere 1015.0 1440 < th dose independent rect. 4 1
673 120.95 radiation 20.0 1440 < th dose independent rect. 4 1
685 120.95 temperature 10.0 1440 > th dose independent rect. 5 23
690 120.96 precipitation 0.1 10 < th dose independent rect. 3 1
691 120.96 precipitation 0.1 10 < th dose dependent rect. 3 1
724 121.05 wind 9.0 30 < th dose independent rect. 3 1
725 121.05 temperature 10.0 30 > th dose independent rect. 3 1
728 121.05 humidity 50.0 30 > th dose independent rect. 3 1
731 121.05 atmosphere 995.0 30 > th dose independent rect. 3 1
734 121.05 radiation 1.0 30 < th dose independent rect. 3 1
740 121.05 temperature 10.0 30 > th dose independent rect. 4 23
741 121.05 radiation 1.0 30 < th dose dependent rect. 3 1
766 121.11 precipitation 0.1 30 < th dose independent rect. 4 23
770 121.11 precipitation 0.1 30 < th dose dependent rect. 4 23
849 121.25 precipitation 0.1 270 > th dose independent rect. 24 2
854 121.25 precipitation 0.1 270 > th dose dependent rect. 24 2
931 121.49 wind 9.0 30 < th dose independent rect. 4 23
936 121.50 atmosphere 1000.0 90 > th dose independent rect. 4 21