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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0516200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF640 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.39 (0.0262) R2 : 0.0022
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0552 (0.0551) R2dN8 : 0.00284 R2N8 : 0.0022
σ : 0.493
deviance : 111.45
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
103.35 0.478 3.37 0.28 0.197 1.04 -0.0857 0.0833 0.00789 6.76 19.6 17 -- --
103.35 0.473 3.37 0.278 0.198 1.01 -0.0862 -- 0.00838 6.74 19.6 22 -- --
103.37 0.474 3.37 0.279 0.196 1.04 -- 0.0862 0.00728 6.81 19.6 17 -- --
103.37 0.474 3.37 0.28 0.196 1.01 -- -- 0.00841 6.78 19.6 22 -- --
105.37 0.478 3.38 0.281 -- 1.03 -- 0.169 0.0153 -- 19.86 22 -- --
108.73 0.489 3.38 0.135 0.205 -- -0.105 -- -0.0448 5.77 -- -- -- --
108.76 0.488 3.38 0.135 0.205 -- -- -- -0.0443 5.87 -- -- -- --
105.38 0.478 3.38 0.284 -- 1 -- -- 0.0126 -- 19.65 22 -- --
105.23 0.478 3.38 -- 0.201 0.825 -- -- -0.0302 6.53 19.6 17 -- --
110.92 0.492 3.39 0.141 -- -- -- -- -0.0396 -- -- -- -- --
109.23 0.489 3.39 -- 0.207 -- -- -- -0.0593 5.84 -- -- -- --
107.3 0.482 3.38 -- -- 0.791 -- -- -0.0228 -- 19.91 17 -- --
111.45 0.493 3.39 -- -- -- -- -- -0.0552 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.54 temperature 15.0 30 > th dose independent rect. 3 23
3 96.51 atmosphere 1000.0 30 > th dose independent rect. 3 23
5 97.28 wind 1.0 30 < th dose independent rect. 23 4
6 97.31 atmosphere 1005.0 90 > th dose dependent rect. 2 1
9 97.52 wind 9.0 10 < th dose independent rect. 3 23
11 97.71 temperature 10.0 30 > th dose dependent rect. 3 23
13 97.83 wind 1.0 30 < th dose independent rect. 2 1
15 97.83 wind 3.0 30 < th dose dependent rect. 2 1
21 97.84 atmosphere 1010.0 30 < th dose dependent rect. 2 1
25 97.85 temperature 20.0 30 > th dose dependent rect. 2 1
32 97.89 temperature 10.0 30 > th dose independent rect. 2 1
34 97.89 temperature 25.0 30 < th dose independent rect. 2 1
36 97.89 humidity 50.0 30 > th dose independent rect. 2 1
39 97.89 atmosphere 995.0 30 > th dose independent rect. 2 1
40 97.89 atmosphere 1010.0 30 < th dose independent rect. 2 1
42 97.89 radiation 1.0 30 < th dose independent rect. 2 1
47 97.89 precipitation 0.1 30 < th dose independent rect. 2 1
50 97.89 radiation 1.0 30 < th dose dependent rect. 2 1
55 97.89 precipitation 0.1 30 < th dose dependent rect. 2 1
56 97.90 humidity 50.0 30 > th dose dependent rect. 2 1
60 97.91 humidity 90.0 30 > th dose independent rect. 2 1
66 97.95 atmosphere 1005.0 30 > th dose independent rect. 2 1
67 97.96 temperature 30.0 30 < th dose dependent rect. 2 1
78 98.10 wind 1.0 30 > th dose independent rect. 2 1
84 98.14 radiation 1.0 14400 < th dose dependent rect. 3 1
126 98.37 wind 1.0 30 < th dose independent rect. 14 13
131 98.53 precipitation 0.1 30 < th dose independent rect. 3 23
132 98.53 precipitation 0.1 30 < th dose dependent rect. 3 23
153 99.02 wind 9.0 1440 < th dose independent rect. 3 1
154 99.02 temperature 10.0 1440 > th dose independent rect. 3 1
157 99.02 temperature 30.0 1440 < th dose independent rect. 3 1
161 99.02 humidity 50.0 1440 > th dose independent rect. 3 1
170 99.02 atmosphere 995.0 1440 > th dose independent rect. 3 1
171 99.02 radiation 1.0 1440 < th dose independent rect. 3 1
191 99.02 temperature 10.0 1440 > th dose independent rect. 4 23
203 99.21 wind 1.0 30 < th dose dependent rect. 23 4
242 100.14 wind 1.0 30 < th dose dependent rect. 14 13
248 100.27 wind 1.0 30 < th dose independent rect. 8 19
252 100.32 atmosphere 1010.0 30 < th dose independent rect. 3 23
259 100.46 humidity 50.0 30 > th dose independent rect. 3 23
267 100.58 wind 1.0 10 < th dose independent rect. 6 21
272 100.65 temperature 15.0 720 > th dose independent rect. 8 7
284 100.94 humidity 80.0 14400 < th dose dependent rect. 1 8
294 101.04 temperature 15.0 720 > th dose independent rect. 3 17
310 101.24 wind 3.0 14400 > th dose independent rect. 10 1
320 101.33 wind 1.0 30 < th dose dependent rect. 8 19
323 101.38 radiation 10.0 30 < th dose dependent rect. 3 23
327 101.44 temperature 15.0 1440 > th dose independent rect. 8 17
328 101.45 humidity 90.0 10 > th dose independent rect. 23 4
338 101.55 wind 9.0 30 < th dose dependent rect. 3 23
341 101.60 atmosphere 1015.0 1440 < th dose independent rect. 1 7
347 101.65 radiation 10.0 30 < th dose independent rect. 3 23
353 101.76 atmosphere 1015.0 1440 < th dose independent rect. 3 1
355 101.76 humidity 80.0 30 > th dose dependent rect. 22 5
357 101.77 wind 3.0 14400 < th dose independent rect. 10 1
363 101.80 humidity 90.0 90 < th dose independent rect. 2 1
389 101.86 temperature 15.0 1440 > th dose independent rect. 8 20
391 101.88 humidity 90.0 1440 > th dose independent rect. 11 3
396 101.98 atmosphere 1015.0 720 < th dose independent rect. 3 8
400 102.01 humidity 90.0 1440 > th dose dependent rect. 11 3
409 102.09 wind 5.0 14400 < th dose dependent rect. 10 1
410 102.11 temperature 15.0 720 > th dose independent rect. 15 17
412 102.13 temperature 15.0 270 > th dose independent rect. 24 23
416 102.21 temperature 15.0 1440 > th dose independent rect. 8 10
430 102.28 precipitation 0.1 720 < th dose independent rect. 23 16
431 102.28 precipitation 0.1 720 < th dose dependent rect. 23 16
432 102.29 wind 7.0 30 < th dose dependent rect. 3 10
439 102.33 humidity 70.0 14400 > th dose independent rect. 8 1
451 102.40 wind 9.0 30 < th dose dependent rect. 3 12
456 102.43 temperature 15.0 720 > th dose independent rect. 16 23
460 102.46 precipitation 0.1 1440 < th dose independent rect. 9 1
461 102.46 precipitation 0.1 1440 < th dose dependent rect. 9 1
468 102.50 humidity 70.0 14400 < th dose independent rect. 8 1
478 102.55 wind 9.0 720 < th dose independent rect. 3 8
479 102.55 temperature 15.0 720 > th dose independent rect. 5 18
480 102.56 humidity 90.0 1440 > th dose dependent rect. 15 1
482 102.59 temperature 15.0 1440 > th dose independent rect. 10 18
483 102.61 wind 1.0 30 < th dose independent rect. 23 1
484 102.61 precipitation 0.1 720 < th dose independent rect. 3 16
485 102.61 precipitation 0.1 720 < th dose dependent rect. 3 16
488 102.64 temperature 15.0 1440 > th dose independent rect. 21 7
489 102.64 temperature 15.0 1440 > th dose independent rect. 16 12
498 102.68 humidity 90.0 1440 > th dose dependent rect. 9 8
503 102.70 precipitation 0.1 1440 < th dose independent rect. 15 1
506 102.70 precipitation 0.1 1440 < th dose dependent rect. 15 1
514 102.74 temperature 20.0 10 < th dose dependent rect. 23 13
519 102.76 humidity 70.0 14400 > th dose independent rect. 4 5
520 102.76 wind 7.0 90 < th dose independent rect. 3 12
525 102.77 humidity 70.0 14400 > th dose independent rect. 1 8
565 102.84 temperature 15.0 90 > th dose independent rect. 21 14
566 102.84 temperature 15.0 1440 > th dose independent rect. 12 16
585 102.88 temperature 15.0 1440 > th dose independent rect. 14 14
606 102.93 precipitation 0.1 1440 > th dose independent rect. 9 4
610 102.93 precipitation 0.1 1440 > th dose dependent rect. 9 4
611 102.94 humidity 90.0 1440 < th dose independent rect. 11 3
613 102.95 precipitation 0.1 1440 > th dose independent rect. 9 1
614 102.95 temperature 15.0 1440 > th dose independent rect. 10 15
615 102.95 precipitation 0.1 1440 > th dose dependent rect. 9 1
616 102.96 precipitation 0.1 1440 > th dose independent rect. 15 1
618 102.96 precipitation 0.1 1440 > th dose dependent rect. 15 1
631 102.99 temperature 15.0 10 > th dose independent rect. 17 9
657 103.04 radiation 1.0 720 > th dose independent rect. 8 7
665 103.05 atmosphere 1015.0 1440 < th dose independent rect. 1 1
672 103.06 precipitation 0.1 720 > th dose independent rect. 5 14
673 103.06 wind 1.0 14400 > th dose dependent rect. 10 1
681 103.09 atmosphere 1015.0 1440 < th dose independent rect. 1 9
688 103.11 temperature 15.0 720 > th dose independent rect. 8 14
692 103.12 temperature 15.0 720 > th dose independent rect. 23 16
693 103.13 temperature 15.0 720 > th dose independent rect. 5 12
695 103.13 humidity 90.0 30 > th dose dependent rect. 23 1
705 103.14 temperature 20.0 30 < th dose dependent rect. 3 22
735 103.21 temperature 25.0 10 < th dose independent rect. 23 4
737 103.21 precipitation 0.1 720 > th dose dependent rect. 5 14
766 103.25 temperature 10.0 720 > th dose independent rect. 3 8
767 103.25 atmosphere 995.0 720 > th dose independent rect. 3 8
787 103.27 humidity 80.0 30 > th dose dependent rect. 20 7
800 103.29 precipitation 0.1 14400 > th dose independent rect. 23 9
813 103.30 temperature 20.0 30 < th dose dependent sin 7 NA
823 103.31 temperature 15.0 1440 > th dose independent rect. 8 3
826 103.31 temperature 15.0 720 > th dose independent rect. 4 14
838 103.33 precipitation 0.1 14400 < th dose independent rect. 23 9
842 103.33 precipitation 0.1 14400 < th dose dependent rect. 23 9
849 103.35 temperature 15.0 30 > th dose dependent rect. 3 4
852 103.36 temperature 10.0 720 > th dose independent rect. 15 8
859 103.36 temperature 20.0 30 < th dose dependent rect. 11 21
869 103.38 temperature 20.0 30 > th dose independent rect. 3 4
870 103.38 temperature 20.0 10 < th dose dependent rect. 11 18
875 103.38 temperature 30.0 10 < th dose dependent rect. 22 19
896 103.40 wind 1.0 30 > th dose independent sin 16 NA
898 103.40 temperature 15.0 10 > th dose independent rect. 14 12
914 103.40 temperature 30.0 10 < th dose dependent rect. 7 21
917 103.40 temperature 20.0 10 < th dose dependent rect. 6 23
920 103.41 humidity 80.0 10 > th dose dependent rect. 3 10
951 103.42 temperature 20.0 30 < th dose dependent rect. 7 21
981 103.44 temperature 15.0 720 > th dose independent rect. 10 10
984 103.44 temperature 20.0 10 < th dose dependent no NA NA
990 103.44 temperature 20.0 10 < th dose dependent rect. 6 19