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Os06g0672400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF640 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.49 (0.0554) R2 : 0.278
β1 : -0.783 (0.209) R2dD : 0.026 R2D : -0.0586
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.34 (0.274) R2dE : 0.144 R2E : -0.135
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.56 (0.124) R2dN8 : 0.355 R2N8 : 0.15
σ : 1.02
deviance : 480
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C
peak time of C : --
E
wheather : wind
threshold : 3.252
memory length : 4508
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14.2
open length of G : 0.65

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
453.73 1 6.4 -0.837 0.559 -1.66 -1.44 -3.55 1.44 6.89 3.909 4377 14.1 0.993
472.5 1.01 6.41 -0.8 0.556 -1.66 -1.32 -- 1.46 6.89 3.853 4468 14.2 0.681
458.21 0.997 6.4 -0.851 0.553 -1.7 -- -3.59 1.44 6.63 3.9 4393 14.1 0.932
471.14 1.01 6.46 -0.743 0.528 -2.09 -- -- 1.55 6.8 3.665 4507 14.2 0.683
473.56 1.01 6.41 -0.846 -- -1.75 -- -3.74 1.45 -- 3.814 4394 14.1 0.932
529.82 1.08 6.56 -0.272 0.571 -- -1.35 -- 1.13 6.49 -- -- -- --
533.82 1.08 6.56 -0.294 0.576 -- -- -- 1.13 5.85 -- -- -- --
480 1.02 6.49 -0.783 -- -2.34 -- -- 1.56 -- 3.252 4508 14.2 0.65
484.31 1.02 6.47 -- 0.476 -1.88 -- -- 1.55 6.74 3.602 4510 14.2 0.617
551.04 1.1 6.56 -0.276 -- -- -- -- 1.15 -- -- -- -- --
536.09 1.08 6.55 -- 0.572 -- -- -- 1.17 5.87 -- -- -- --
493.01 1.03 6.48 -- -- -1.99 -- -- 1.56 -- 3.328 4515 14.2 0.511
553.05 1.1 6.56 -- -- -- -- -- 1.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 460.56 wind 1 14400 < th dose independent rect. 4 1
2 461.39 wind 1 14400 > th dose independent rect. 4 1
3 463.49 wind 5 14400 < th dose independent rect. 14 1
4 463.75 wind 5 14400 > th dose independent rect. 14 1
5 464.38 wind 3 14400 > th dose dependent rect. 14 1
7 465.25 atmosphere 1000 30 > th dose independent rect. 19 23
8 465.28 humidity 80 4320 < th dose independent rect. 21 1
9 465.45 humidity 80 14400 < th dose dependent rect. 20 1
13 466.51 wind 5 14400 < th dose independent rect. 16 1
14 466.78 atmosphere 1000 90 > th dose independent rect. 13 23
15 466.94 wind 5 14400 > th dose independent rect. 16 1
21 468.55 wind 1 43200 < th dose independent rect. 4 3
23 468.71 atmosphere 1000 4320 < th dose independent rect. 17 1
25 468.81 wind 5 14400 < th dose independent rect. 14 3
26 468.83 temperature 30 4320 > th dose independent rect. 10 4
27 468.84 atmosphere 1005 1440 < th dose dependent rect. 9 1
28 468.86 atmosphere 1005 1440 < th dose dependent rect. 7 3
29 468.96 temperature 30 4320 > th dose independent rect. 18 20
45 469.01 atmosphere 1000 90 < th dose independent rect. 8 22
53 469.31 wind 5 14400 > th dose independent rect. 14 3
54 469.38 atmosphere 1005 90 < th dose dependent rect. 8 22
59 469.55 wind 9 14400 < th dose dependent rect. 14 1
61 469.57 temperature 30 4320 < th dose independent rect. 21 17
63 469.62 temperature 30 4320 < th dose independent rect. 18 20
66 469.67 temperature 30 4320 < th dose independent rect. 24 14
78 469.84 temperature 30 4320 < th dose independent rect. 8 6
89 469.98 atmosphere 1000 1440 < th dose independent rect. 15 5
98 470.09 humidity 80 14400 > th dose independent rect. 21 19
100 470.11 humidity 80 14400 > th dose independent rect. 20 3
101 470.11 atmosphere 1000 1440 > th dose independent rect. 15 5
104 470.15 wind 1 43200 > th dose independent rect. 2 5
110 470.24 atmosphere 1000 1440 > th dose independent rect. 7 15
112 470.28 atmosphere 1000 1440 > th dose independent rect. 9 13
116 470.31 atmosphere 1000 1440 > th dose independent sin 20 NA
122 470.36 atmosphere 1000 1440 < th dose independent sin 20 NA
130 470.39 atmosphere 1000 1440 < th dose independent rect. 9 11
135 470.42 atmosphere 1000 1440 < th dose independent rect. 9 13
138 470.43 atmosphere 1000 1440 < th dose independent rect. 7 15
155 470.51 atmosphere 1000 4320 > th dose independent rect. 17 1
216 470.82 atmosphere 1005 1440 < th dose dependent sin 5 NA
220 470.83 atmosphere 1000 30 > th dose independent rect. 15 21
252 470.96 humidity 80 14400 < th dose dependent rect. 19 3
254 470.97 atmosphere 1000 10 > th dose independent rect. 15 23
304 471.19 atmosphere 995 14400 > th dose independent rect. 18 3
416 471.55 atmosphere 1005 1440 < th dose dependent rect. 19 17
417 471.56 temperature 30 4320 < th dose independent sin 7 NA
420 471.56 atmosphere 1000 1440 > th dose independent rect. 13 23
456 471.65 atmosphere 1000 1440 < th dose independent rect. 13 23
474 471.70 atmosphere 1000 1440 > th dose independent no NA NA
487 471.76 atmosphere 1000 1440 < th dose independent rect. 21 23
492 471.78 temperature 30 4320 > th dose independent sin 7 NA
495 471.79 atmosphere 1000 1440 < th dose independent no NA NA
524 471.89 atmosphere 1000 90 < th dose independent rect. 18 23
540 471.97 atmosphere 1000 1440 > th dose independent rect. 16 23
547 472.00 atmosphere 1005 1440 < th dose dependent rect. 1 19
593 472.15 wind 5 4320 > th dose independent rect. 14 13
627 472.24 atmosphere 1000 4320 < th dose independent rect. 21 1
633 472.25 wind 5 4320 < th dose independent rect. 14 13
638 472.26 atmosphere 1000 4320 > th dose independent rect. 21 1
686 472.40 atmosphere 1000 90 > th dose independent rect. 3 23
702 472.44 wind 1 43200 < th dose independent rect. 2 5
716 472.46 atmosphere 1000 270 > th dose independent rect. 17 23
777 472.59 humidity 80 14400 < th dose independent rect. 20 20
802 472.65 atmosphere 1005 1440 < th dose dependent no NA NA
805 472.67 atmosphere 1000 270 > th dose independent rect. 1 23
877 472.88 humidity 70 4320 < th dose independent rect. 11 1
977 473.22 wind 3 43200 < th dose dependent rect. 4 2