Os05g0347400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF640 domain containing protein.
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Os05g0347400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF640 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.78 | 0.384 | 3.11 | -1.2 | 0.0242 | 1.68 | -0.324 | -10 | 0.172 | 18.5 | 30.06 | 800 | -- | -- |
| 69.74 | 0.389 | 3 | -0.175 | 0.0461 | 0.559 | -0.317 | -- | 0.171 | 18.8 | 31.46 | 828 | -- | -- |
| 66.85 | 0.381 | 3.13 | -1.34 | 0.0653 | 1.61 | -- | -9.84 | 0.173 | 18.5 | 30.1 | 879 | -- | -- |
| 69.99 | 0.39 | 3 | -0.16 | 0.0649 | 0.534 | -- | -- | 0.174 | 19 | 31.46 | 850 | -- | -- |
| 67.01 | 0.381 | 3.13 | -1.32 | -- | 1.67 | -- | -10.1 | 0.176 | -- | 30.1 | 853 | -- | -- |
| 77.99 | 0.414 | 3.02 | -0.0709 | 0.162 | -- | -0.0571 | -- | 0.109 | 20 | -- | -- | -- | -- |
| 78 | 0.414 | 3.02 | -0.0694 | 0.162 | -- | -- | -- | 0.109 | 20 | -- | -- | -- | -- |
| 70.14 | 0.39 | 3 | -0.161 | -- | 0.571 | -- | -- | 0.173 | -- | 31.38 | 820 | -- | -- |
| 70.64 | 0.391 | 2.99 | -- | 0.0715 | 0.508 | -- | -- | 0.187 | 19 | 31.5 | 849 | -- | -- |
| 79.43 | 0.416 | 3.01 | -0.0709 | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
| 78.13 | 0.413 | 3.01 | -- | 0.162 | -- | -- | -- | 0.116 | 20 | -- | -- | -- | -- |
| 70.8 | 0.392 | 2.99 | -- | -- | 0.553 | -- | -- | 0.187 | -- | 31.4 | 809 | -- | -- |
| 79.57 | 0.416 | 3.01 | -- | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.92 | temperature | 30 | 720 | > th | dose dependent | sin | 11 | NA |
| 2 | 65.95 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 8 |
| 5 | 66.10 | temperature | 30 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 6 | 66.13 | temperature | 30 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 39 | 66.25 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 20 |
| 43 | 66.35 | temperature | 30 | 720 | > th | dose independent | sin | 11 | NA |
| 45 | 66.36 | temperature | 30 | 720 | < th | dose independent | sin | 11 | NA |
| 47 | 66.39 | temperature | 30 | 720 | > th | dose independent | rect. | 14 | 5 |
| 158 | 67.07 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 16 |
| 209 | 67.19 | temperature | 30 | 720 | > th | dose dependent | no | NA | NA |
| 348 | 67.55 | humidity | 50 | 720 | < th | dose independent | rect. | 16 | 1 |
| 351 | 67.57 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 8 |
| 352 | 67.57 | humidity | 50 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 354 | 67.63 | humidity | 50 | 720 | > th | dose independent | rect. | 15 | 8 |
| 362 | 67.74 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 16 |
| 389 | 67.89 | humidity | 60 | 720 | < th | dose dependent | rect. | 16 | 17 |
| 393 | 67.92 | humidity | 60 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 441 | 67.95 | humidity | 50 | 720 | < th | dose independent | rect. | 16 | 19 |
| 446 | 67.97 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 16 |
| 448 | 67.98 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 19 |
| 451 | 67.99 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 23 |
| 453 | 67.99 | humidity | 50 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 454 | 68.00 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 12 |
| 478 | 68.03 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 23 |
| 497 | 68.05 | temperature | 30 | 720 | > th | dose independent | rect. | 10 | 9 |
| 566 | 68.13 | humidity | 50 | 720 | > th | dose independent | rect. | 16 | 16 |
| 585 | 68.18 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 708 | 68.21 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 23 |
| 716 | 68.27 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 14 |
| 719 | 68.28 | humidity | 70 | 270 | < th | dose independent | rect. | 16 | 4 |
| 732 | 68.29 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 16 |
| 759 | 68.35 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 781 | 68.39 | humidity | 50 | 720 | > th | dose independent | sin | 11 | NA |
| 819 | 68.44 | humidity | 70 | 720 | < th | dose dependent | sin | 12 | NA |
| 821 | 68.45 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 23 |
| 870 | 68.56 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 13 |
| 880 | 68.56 | radiation | 10 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 903 | 68.59 | humidity | 50 | 720 | < th | dose independent | sin | 11 | NA |
| 904 | 68.59 | radiation | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 917 | 68.60 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 930 | 68.60 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 23 |
| 955 | 68.65 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 23 |
| 956 | 68.65 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 23 |