BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0538600 Os09g0538600|AK108458
(71 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0538600 Similar to Peroxisome type ascorbate peroxidase 147 2e-36
Os08g0549100 Similar to Peroxisome type ascorbate peroxidase 109 4e-25
Os04g0223300 Similar to Peroxisome type ascorbate peroxidase 105 8e-24
Os03g0285700 Similar to L-ascorbate peroxidase 80 3e-16
AK122175 80 4e-16
Os07g0694700 L-ascorbate peroxidase 76 5e-15
Os04g0434800 Similar to Thylakoid-bound ascorbate peroxidas... 64 3e-11
Os02g0553200 Similar to Thylakoid-bound ascorbate peroxidas... 63 4e-11
>Os09g0538600 Similar to Peroxisome type ascorbate peroxidase
Length = 71
Score = 147 bits (370), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 1 LPLIWLSYFLTEPIKRKHPNITYADLYQLAGVVAVEVTGGPTVDFVPGRRDSSVCPREGR 60
LPLIWLSYFLTEPIKRKHPNITYADLYQLAGVVAVEVTGGPTVDFVPGRRDSSVCPREGR
Sbjct: 1 LPLIWLSYFLTEPIKRKHPNITYADLYQLAGVVAVEVTGGPTVDFVPGRRDSSVCPREGR 60
Query: 61 LPDAKKGKGTS 71
LPDAKKGKGTS
Sbjct: 61 LPDAKKGKGTS 71
>Os08g0549100 Similar to Peroxisome type ascorbate peroxidase
Length = 291
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/58 (89%), Positives = 54/58 (93%)
Query: 10 LTEPIKRKHPNITYADLYQLAGVVAVEVTGGPTVDFVPGRRDSSVCPREGRLPDAKKG 67
L EPIK K P ITYADLYQLAGVVAVEVTGGPTV+F+PGRRDSSVCPREGRLPDAKKG
Sbjct: 78 LLEPIKAKSPKITYADLYQLAGVVAVEVTGGPTVEFIPGRRDSSVCPREGRLPDAKKG 135
>Os04g0223300 Similar to Peroxisome type ascorbate peroxidase
Length = 291
Score = 105 bits (262), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 56/64 (87%)
Query: 4 IWLSYFLTEPIKRKHPNITYADLYQLAGVVAVEVTGGPTVDFVPGRRDSSVCPREGRLPD 63
I ++ L EP+K+KHP ITYADLYQLAGVVAVEVTGGPT+D+VPGRRDSS P EGRLPD
Sbjct: 73 IKIAIDLLEPMKQKHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSSDSPEEGRLPD 132
Query: 64 AKKG 67
AKKG
Sbjct: 133 AKKG 136
>Os03g0285700 Similar to L-ascorbate peroxidase
Length = 250
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 43/58 (74%)
Query: 10 LTEPIKRKHPNITYADLYQLAGVVAVEVTGGPTVDFVPGRRDSSVCPREGRLPDAKKG 67
+ EPIK + P I+YAD YQLAGVVAVEV+GGP V F PGR D P EGRLPDA KG
Sbjct: 80 MLEPIKEEIPTISYADFYQLAGVVAVEVSGGPAVPFHPGREDKPAPPPEGRLPDATKG 137
>AK122175
Length = 947
Score = 79.7 bits (195), Expect = 4e-16, Method: Composition-based stats.
Identities = 38/58 (65%), Positives = 44/58 (75%)
Query: 10 LTEPIKRKHPNITYADLYQLAGVVAVEVTGGPTVDFVPGRRDSSVCPREGRLPDAKKG 67
L +PIK + P ++YAD YQLAGVVAVEVTGGP V F PGR+D P EGRLPDA +G
Sbjct: 81 LLDPIKDQLPILSYADFYQLAGVVAVEVTGGPEVPFHPGRQDKPEPPPEGRLPDATQG 138
>Os07g0694700 L-ascorbate peroxidase
Length = 251
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 44/58 (75%)
Query: 10 LTEPIKRKHPNITYADLYQLAGVVAVEVTGGPTVDFVPGRRDSSVCPREGRLPDAKKG 67
L +PIK + P ++YAD YQLAGVVAVEVTGGP V F PGR+D P EGRLPDA +G
Sbjct: 81 LLDPIKDQLPILSYADFYQLAGVVAVEVTGGPEVPFHPGRQDKPEPPPEGRLPDATQG 138
>Os04g0434800 Similar to Thylakoid-bound ascorbate peroxidase (EC 1.11.1.11)
(Fragment)
Length = 359
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 10 LTEPIKRKHPNITYADLYQLAGVVAVEVTGGPTVDFVPGRRDSS---VCPREGRLPDA 64
L +PIK K+PNI+YADL+QLA A+E GGP + GR D + CP EG+LPDA
Sbjct: 160 LVQPIKDKYPNISYADLFQLASATAIEEAGGPKIPMTYGRIDVTGPEQCPPEGKLPDA 217
>Os02g0553200 Similar to Thylakoid-bound ascorbate peroxidase (EC 1.11.1.11)
(Fragment)
Length = 478
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 10 LTEPIKRKHPNITYADLYQLAGVVAVEVTGGPTVDFVPGRRD---SSVCPREGRLPDA 64
L +PIK K+P ITYADL+QLA A+E GGP + GR D + CP EGRLPDA
Sbjct: 159 LIQPIKDKYPGITYADLFQLASATAIEEAGGPKIPMKYGRVDVTAAEQCPPEGRLPDA 216
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.140 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,843,736
Number of extensions: 100780
Number of successful extensions: 338
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 8
Length of query: 71
Length of database: 17,035,801
Length adjustment: 42
Effective length of query: 29
Effective length of database: 14,842,813
Effective search space: 430441577
Effective search space used: 430441577
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)