Os04g0223300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxisome type ascorbate peroxidase.
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Os04g0223300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxisome type ascorbate peroxidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 736.91 | 1.28 | 6.96 | -9.45 | 0.547 | 3.51 | -0.00844 | -9.73 | -1.9 | 8.95 | 24.69 | 1379 | -- | -- |
| 758.32 | 1.28 | 6.82 | -7.78 | 0.501 | 3.25 | 0.116 | -- | -2.06 | 8.5 | 18.54 | 8517 | -- | -- |
| 736.77 | 1.26 | 6.96 | -9.43 | 0.562 | 3.53 | -- | -9.79 | -1.89 | 9.06 | 24.72 | 1365 | -- | -- |
| 758.03 | 1.28 | 6.81 | -7.7 | 0.515 | 3.24 | -- | -- | -2.03 | 8.05 | 18.66 | 8531 | -- | -- |
| 753.13 | 1.28 | 6.97 | -9.33 | -- | 3.38 | -- | -8.8 | -1.98 | -- | 23.83 | 1398 | -- | -- |
| 1031.17 | 1.51 | 6.54 | -5.85 | 0.561 | -- | 0.102 | -- | -0.841 | 6.8 | -- | -- | -- | -- |
| 1031.19 | 1.5 | 6.54 | -5.85 | 0.561 | -- | -- | -- | -0.842 | 6.8 | -- | -- | -- | -- |
| 772.36 | 1.29 | 6.83 | -7.7 | -- | 3.23 | -- | -- | -2.03 | -- | 18.67 | 8575 | -- | -- |
| 1865.33 | 2.01 | 6.45 | -- | 0.607 | 1.25 | -- | -- | -0.459 | 7.77 | 29.1 | 7986 | -- | -- |
| 1047.66 | 1.51 | 6.56 | -5.84 | -- | -- | -- | -- | -0.831 | -- | -- | -- | -- | -- |
| 1932.44 | 2.06 | 6.4 | -- | 0.5 | -- | -- | -- | -0.19 | 7.51 | -- | -- | -- | -- |
| 1866.79 | 2.01 | 6.43 | -- | -- | 1.16 | -- | -- | -0.253 | -- | 30.3 | 7037 | -- | -- |
| 1945.84 | 2.06 | 6.41 | -- | -- | -- | -- | -- | -0.183 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 674.62 | wind | 3 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 2 | 674.68 | wind | 3 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 7 | 675.24 | wind | 3 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 13 | 675.47 | wind | 3 | 43200 | > th | dose dependent | no | NA | NA |
| 14 | 675.67 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 25 | 676.50 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 31 | 676.72 | wind | 3 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 47 | 677.94 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 22 |
| 48 | 678.14 | wind | 5 | 43200 | < th | dose independent | rect. | 2 | 22 |
| 56 | 678.48 | wind | 3 | 43200 | > th | dose dependent | sin | 1 | NA |
| 74 | 678.95 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 80 | 679.08 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 14 |
| 83 | 679.15 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 96 | 679.40 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 21 |
| 100 | 679.48 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 135 | 680.00 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 20 |
| 141 | 680.05 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 142 | 680.07 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 22 |
| 156 | 680.26 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 161 | 680.35 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 164 | 680.37 | wind | 5 | 43200 | < th | dose independent | rect. | 21 | 23 |
| 165 | 680.37 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 213 | 681.00 | temperature | 30 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 230 | 681.23 | temperature | 30 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 260 | 681.70 | wind | 5 | 43200 | > th | dose independent | rect. | 22 | 23 |
| 288 | 682.32 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 360 | 683.48 | temperature | 30 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 370 | 683.63 | temperature | 30 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 383 | 683.88 | wind | 5 | 43200 | < th | dose independent | rect. | 18 | 23 |
| 397 | 684.11 | temperature | 30 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 398 | 684.12 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 417 | 684.46 | temperature | 30 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 418 | 684.46 | temperature | 30 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 427 | 684.48 | temperature | 30 | 43200 | < th | dose independent | rect. | 6 | 8 |
| 435 | 684.51 | temperature | 30 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 475 | 684.66 | temperature | 30 | 43200 | > th | dose independent | sin | 5 | NA |
| 476 | 684.66 | temperature | 30 | 43200 | < th | dose independent | sin | 5 | NA |
| 479 | 684.70 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 565 | 685.34 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 841 | 687.32 | temperature | 30 | 43200 | > th | dose independent | no | NA | NA |
| 981 | 687.55 | temperature | 30 | 43200 | < th | dose independent | rect. | 9 | 13 |
| 985 | 687.55 | temperature | 30 | 43200 | < th | dose independent | rect. | 9 | 18 |
| 998 | 687.61 | temperature | 30 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 999 | 687.62 | temperature | 30 | 43200 | < th | dose independent | rect. | 2 | 20 |